Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001526.1 Corchorus olitorius cultivar O-4 contig01526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30


Found at i:845 original size:18 final size:17

Alignment explanation


    Indices: 822--861  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        812 AACCCAAACA

                  *           
        822 TTTTTTCGTTT-CTTTCT
          1 TTTTTTTGTTTCCTTT-T

                             
        839 TTTTTTTGTTTCCTTTT
          1 TTTTTTTGTTTCCTTTT

                  
        856 TTTTTT
          1 TTTTTT

        862 AAGGGAAGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17   17  0.81
  18    4  0.19

ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82


Consensus pattern (17 bp):   
TTTTTTTGTTTCCTTTT
Done.