Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015262.1 Corchorus olitorius cultivar O-4 contig15295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87001

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--229
13
2.0
13
100
0
52
61
0
0
38
0.96
681--1172
250
1.9
254
95
2
884
35
16
20
26
1.94
9893--9921
3
9.7
3
100
0
58
68
0
31
0
0.89
11081--11106
1
26.0
1
100
0
52
0
0
0
100
0.00
26427--26491
18
3.6
19
82
15
77
40
3
3
53
1.32
26447--26479
2
16.5
2
87
12
50
45
3
0
51
1.16
34164--34212
22
2.2
22
89
7
73
30
8
20
40
1.81
34252--34492
22
10.8
22
73
11
195
38
9
16
35
1.82
34258--34311
27
2.0
27
85
7
74
46
5
11
37
1.63
34285--35195
44
20.7
44
68
15
248
36
9
17
37
1.81
34285--34521
22
10.8
22
70
17
102
38
10
16
34
1.83
34724--34777
21
2.5
22
84
6
74
46
7
9
37
1.64
34810--35214
22
18.6
21
65
16
87
36
8
16
38
1.79
34858--34944
45
1.9
45
84
9
115
43
3
16
36
1.64
34918--35214
22
13.6
22
68
15
136
35
9
16
38
1.82
35067--35174
46
2.4
44
84
4
135
35
13
14
36
1.86
35317--35367
22
2.5
20
79
17
59
43
7
9
39
1.67
41715--41741
13
2.1
13
100
0
54
29
22
0
48
1.51
43275--43356
41
2.0
41
100
0
164
29
17
17
36
1.92
44500--44536
14
2.7
14
95
4
67
59
5
5
29
1.42
45616--45646
5
6.2
5
92
0
53
61
3
0
35
1.12
48421--48462
22
1.9
22
85
0
57
40
28
19
11
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49748--49818
31
2.3
30
83
7
81
33
25
4
36
1.75
51549--51596
18
2.7
18
75
15
55
52
0
2
45
1.12
55904--55949
23
2.1
21
88
8
65
65
4
13
17
1.42
65977--66017
19
2.2
19
100
0
82
19
21
19
39
1.93
66413--66438
11
2.4
11
100
0
52
0
15
0
84
0.62
67819--67846
13
2.2
13
100
0
56
50
21
14
14
1.78
68175--68390
110
2.0
110
94
1
380
25
22
15
37
1.93
75579--75627
24
2.0
24
88
0
71
14
20
18
46
1.83
82719--82764
23
2.0
23
100
0
92
34
21
21
21
1.97
86975--87001
1
27.0
1
100
0
54
0
0
0
100
0.00

Tables:   1

The End!