Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015263.1 Corchorus olitorius cultivar O-4 contig15296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44743

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
855--882
2
14.0
2
100
0
56
50
0
0
50
1.00
2984--3967
218
4.6
216
84
3
1151
39
14
16
28
1.89
13555--13580
13
2.0
13
100
0
52
92
0
7
0
0.39
15512--15538
7
3.9
7
100
0
54
59
0
14
25
1.36
15932--15956
12
2.1
12
100
0
50
68
16
8
8
1.38
17230--17256
2
13.5
2
100
0
54
51
0
0
48
1.00
18911--18973
30
2.1
30
91
5
101
20
34
15
28
1.94
23478--23557
42
1.9
42
84
5
108
36
3
28
31
1.75
24024--24245
65
3.4
65
92
2
365
40
11
21
26
1.88
24211--24380
67
2.5
68
93
2
290
37
17
19
25
1.93
24409--24839
132
3.3
131
79
8
451
42
13
21
22
1.88
24532--24843
65
4.7
66
91
1
448
42
14
20
22
1.88
27466--27501
19
1.9
18
88
5
54
27
22
8
41
1.82
31251--31324
22
3.1
22
68
26
60
44
4
14
36
1.65
31242--31627
101
3.8
101
88
2
555
41
5
16
36
1.71
31242--31627
51
7.6
50
88
3
551
41
5
16
36
1.71
31394--31475
22
3.5
22
69
24
60
45
3
15
35
1.64
31242--31627
152
2.5
151
92
0
628
41
5
16
36
1.71
35591--35624
15
2.3
15
89
0
50
26
38
14
20
1.91
40532--40584
26
2.0
26
100
0
106
35
18
15
30
1.92
42233--42283
21
2.4
21
83
0
66
15
3
25
54
1.58

Tables:   1

The End!