Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015267.1 Corchorus olitorius cultivar O-4 contig15300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10937
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:4221 original size:51 final size:51

Alignment explanation


    Indices: 4158--4259  Score: 204
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       4148 AGGGAGGAGA

                                                               
       4158 TTAAAGACAACATCAAATACAAAATCCCAAAGTTCAATGGGAGAGGGACAC
          1 TTAAAGACAACATCAAATACAAAATCCCAAAGTTCAATGGGAGAGGGACAC

                                                               
       4209 TTAAAGACAACATCAAATACAAAATCCCAAAGTTCAATGGGAGAGGGACAC
          1 TTAAAGACAACATCAAATACAAAATCCCAAAGTTCAATGGGAGAGGGACAC

       4260 ATTCGGATTA


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   51  1.00

ACGTcount: A:0.47, C:0.20, G:0.18, T:0.16


Consensus pattern (51 bp):   
TTAAAGACAACATCAAATACAAAATCCCAAAGTTCAATGGGAGAGGGACAC
Done.