Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015269.1 Corchorus olitorius cultivar O-4 contig15302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5200
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:601 original size:22 final size:22

Alignment explanation


    Indices: 554--599  Score: 67
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        544 CTCGGTGGCA

                 *                
        554 CCCGGACATGACTAGGCCATAG
          1 CCCGGTCATGACTAGGCCATAG

                         *        
        576 CCCGGTCATGACTCGGCCAT-G
          1 CCCGGTCATGACTAGGCCATAG

               
        597 CCC
          1 CCC

        600 CGCGTCAGGC


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15


Consensus pattern (22 bp):   
CCCGGTCATGACTAGGCCATAG
Done.