Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015275.1 Corchorus olitorius cultivar O-4 contig15308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9190
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Found at i:7949 original size:2 final size:2

Alignment explanation


    Indices: 7942--7978  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       7932 ATTATTAAAA

                                                      *            
       7942 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       7979 AAGTCCACAC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (2 bp):   
AT

Done.