genome.fa.s15278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015278.1 Corchorus olitorius cultivar O-4 contig15311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26942

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071--1198	32	3.9	32	89	3	175	50	7	15	26	1.71
1071--1209	65	2.2	65	85	1	190	51	7	15	25	1.69
1325--1445	21	5.8	21	77	10	122	49	4	26	19	1.68
1325--1445	42	2.9	42	81	7	140	49	4	26	19	1.68
1364--1553	35	5.4	35	79	9	174	51	5	24	18	1.68
1325--1553	7	32.4	7	65	18	73	50	5	25	18	1.67
1395--1571	72	2.5	71	85	5	216	51	5	23	19	1.67
1393--1571	35	5.0	36	84	3	204	50	5	24	20	1.67
1552--1597	21	2.2	21	84	0	56	54	8	17	19	1.68
1415--1587	36	4.8	37	80	7	164	51	5	23	20	1.67
1601--1689	25	3.5	25	80	13	92	57	7	16	17	1.63
13231--13256	2	13.0	2	100	0	52	50	0	0	50	1.00
16368--16425	29	2.0	29	86	0	80	13	12	22	51	1.74
17577--17720	32	4.4	32	85	4	173	50	6	15	27	1.69
17831--17953	21	5.8	21	72	12	76	49	5	23	21	1.70
17831--17979	42	3.4	42	71	13	113	50	5	23	20	1.69
17912--17974	28	2.2	28	88	0	90	50	4	22	22	1.67
17933--18067	36	3.8	35	83	4	146	53	3	23	19	1.61
18051--18117	21	3.2	21	73	0	62	55	4	20	19	1.60
17964--18086	36	3.4	37	80	7	137	55	4	22	17	1.59
18100--18188	25	3.4	25	77	14	83	59	5	15	19	1.55
19347--19386	13	3.1	13	85	0	53	45	15	15	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19379--19409	11	2.8	11	90	0	53	32	9	22	35	1.87
19846--19875	15	1.9	16	93	6	53	20	6	10	63	1.47
19924--20002	41	1.9	41	92	0	131	35	17	16	30	1.92
22469--22532	33	1.9	33	83	0	83	31	21	20	26	1.98
24551--24584	12	2.8	12	100	0	68	44	11	17	26	1.83
24584--24623	13	3.1	13	85	0	53	45	15	15	25	1.84
24616--24646	11	2.8	11	90	0	53	32	9	22	35	1.87
25953--25988	6	6.0	6	100	0	72	0	16	50	33	1.46

Tables:   1

The End!