Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015282.1 Corchorus olitorius cultivar O-4 contig15315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7506
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:5804 original size:11 final size:11

Alignment explanation


    Indices: 5788--5835  Score: 50
    Period size: 11  Copynumber: 4.7  Consensus size: 11

       5778 GAAGTTCATG

                       
       5788 TTTGAAGACCA
          1 TTTGAAGACCA

                    ** 
       5799 TTTGAAGATAA
          1 TTTGAAGACCA

                       
       5810 TTTGAAGA-CA
          1 TTTGAAGACCA

                       
       5820 --TGAAGACC-
          1 TTTGAAGACCA

                    
       5828 TTTGAAGA
          1 TTTGAAGA

       5836 ATTATTTCAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 7
        0.76            0.07        0.17

Matches are distributed among these distances:
   8    6  0.19
   9    1  0.03
  10    7  0.23
  11   17  0.55

ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29


Consensus pattern (11 bp):   
TTTGAAGACCA
Done.