Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015283.1 Corchorus olitorius cultivar O-4 contig15316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13569
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1538 original size:66 final size:67
Alignment explanation
Indices: 1432--1562 Score: 151
Period size: 66 Copynumber: 2.0 Consensus size: 67
1422 TCTTGTCTCT
* * * * *
1432 GTGTGGTTATCAAAATTTCATAAGATGCTTATTATAATTTCATGAGG-C-GGTTATCAAAATTTC
1 GTGTGATTACCAAAATTTCATAAGAAGCTTATCAAAATTTCAT-AGGACAGGTTATCAAAATTTC
1495 ATA
65 ATA
* *
1498 GTGTGATTACCAAAATTTCATATGAAAG-TTATCAAAATTTCATAGGATCAGGTTATTAAAATTT
1 GTGTGATTACCAAAATTTCATAAG-AAGCTTATCAAAATTTCATAGGA-CAGGTTATCAAAATTT
1562 C
64 C
1563 TTAGGAAAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
65 3 0.06
66 34 0.63
67 3 0.06
68 14 0.26
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (67 bp):
GTGTGATTACCAAAATTTCATAAGAAGCTTATCAAAATTTCATAGGACAGGTTATCAAAATTTCA
TA
Found at i:1575 original size:90 final size:88
Alignment explanation
Indices: 1436--1623 Score: 218
Period size: 90 Copynumber: 2.1 Consensus size: 88
1426 GTCTCTGTGT
* **
1436 GGTTATCAAAATTTCATAAGATGCTTATTATAATTTCATGAGGCGGTTATCAAAATTTCATAGTG
1 GGTTATCAAAATTTCATAAGATGCTTATTAAAATTTCATGAGGAAGTTATCAAAATTTCATAGTG
1501 TGATTACCAAAATTTCATATGAAA
66 TGATTACCAAAATTTCATA-GAAA
* * * **
1525 -GTTATCAAAATTTCATAGGATCAGGTTATTAAAATTTC-TTAGGAAAGTTATTGAAATTTCATA
1 GGTTATCAAAATTTCATAAGAT--GCTTATTAAAATTTCATGAGG-AAGTTATCAAAATTTCATA
* * * *
1588 GTGTGGTTATCACAATTTTATAGAAA
63 GTGTGATTACCAAAATTTCATAGAAA
1614 GGTTATCAAA
1 GGTTATCAAA
1624 GAGATTATCA
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
88 20 0.24
89 8 0.10
90 55 0.66
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (88 bp):
GGTTATCAAAATTTCATAAGATGCTTATTAAAATTTCATGAGGAAGTTATCAAAATTTCATAGTG
TGATTACCAAAATTTCATAGAAA
Found at i:1604 original size:22 final size:21
Alignment explanation
Indices: 1434--1610 Score: 111
Period size: 22 Copynumber: 8.0 Consensus size: 21
1424 TTGTCTCTGT
1434 GTGGTTATCAAAATTTCATAAG
1 GTGGTTATCAAAATTTCAT-AG
* * * *
1456 ATGCTTATTATAATTTCATGAG
1 GTGGTTATCAAAATTTCAT-AG
*
1478 GCGGTTATCAAAATTTCATAG
1 GTGGTTATCAAAATTTCATAG
* *
1499 TGTGATTACCAAAATTTCATATG
1 -GTGGTTATCAAAATTTCATA-G
***
1522 AAAGTTATCAAAATTTCATAG
1 GTGGTTATCAAAATTTCATAG
* *
1543 GATCAGGTTATTAAAATTTCTTAG
1 G-T--GGTTATCAAAATTTCATAG
** **
1567 GAAAGTTATTGAAATTTCATAG
1 G-TGGTTATCAAAATTTCATAG
* *
1589 TGTGGTTATCACAATTTTATAG
1 -GTGGTTATCAAAATTTCATAG
1611 AAAGGTTATC
Statistics
Matches: 116, Mismatches: 33, Indels: 12
0.72 0.20 0.07
Matches are distributed among these distances:
21 3 0.03
22 93 0.80
23 2 0.02
24 18 0.16
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (21 bp):
GTGGTTATCAAAATTTCATAG
Found at i:1653 original size:22 final size:21
Alignment explanation
Indices: 1628--2042 Score: 146
Period size: 22 Copynumber: 18.8 Consensus size: 21
1618 ATCAAAGAGA
*
1628 TTATCAAAATGTCATATCGAGG
1 TTATCAAAATTTCATAT-GAGG
*
1650 TTAT-AAGAATTTCATAGTGTGG
1 TTATCAA-AATTTCATA-TGAGG
* *
1672 TTAACAAAATTTCATAAGGAGG
1 TTATCAAAATTTCAT-ATGAGG
* **
1694 TTA-CTAATATTTCATGGGGAGG
1 TTATC-AAAATTTCAT-ATGAGG
*
1716 TTATCAAAATTTCATAGTGTGG
1 TTATCAAAATTTCATA-TGAGG
1738 TTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATATG-AGG
* *
1760 TTAT-AAAAGTCTCAATTTCATAAGG
1 TTATCAAAA-TTTC-A--T-ATGAGG
* * * *
1785 AGTACCAAAATATGATA-GAAGG
1 -TTATCAAAATTTCATATG-AGG
*
1807 TTATC-AAATCTCATA-GAGTG
1 TTATCAAAATTTCATATGAG-G
* * * *
1827 ATTGTCGATATTTCATAGAGATTGG
1 -TTATCAAAATTTCATA-TGA--GG
* *
1852 ATTATCAAAATTT-ATAGGAAGA
1 -TTATCAAAATTTCATATG-AGG
**
1874 TTATCAAAATTTCATAGTGTTG
1 TTATCAAAATTTCATA-TGAGG
* *
1896 TTATCAAAATTTCAAAGCGAGG
1 TTATCAAAATTTCATA-TGAGG
* * * *
1918 TTATCAAAATTACACAATGTGA
1 TTATCAAAATTTCA-TATGAGG
*
1940 TCATCAAAATTTCATA-GAGGGG
1 TTATCAAAATTTCATATGA--GG
* * *
1962 TCAACAAAATTTTATA-GAGAG
1 TTATCAAAATTTCATATGAG-G
*
1983 TTATCAAAATTTCATAAAGAGG
1 TTATCAAAATTTCAT-ATGAGG
* * * *
2005 TTATCAAATTTTCAAAATGTGA
1 TTATCAAAATTTC-ATATGAGG
*
2027 TTACCAAAATTTCATA
1 TTATCAAAATTTCATA
2043 GTGGTATTTA
Statistics
Matches: 298, Mismatches: 62, Indels: 67
0.70 0.15 0.16
Matches are distributed among these distances:
19 2 0.01
20 12 0.04
21 44 0.15
22 192 0.64
23 15 0.05
24 6 0.02
25 16 0.05
26 7 0.02
27 4 0.01
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (21 bp):
TTATCAAAATTTCATATGAGG
Found at i:1763 original size:44 final size:42
Alignment explanation
Indices: 1628--2390 Score: 224
Period size: 44 Copynumber: 17.8 Consensus size: 42
1618 ATCAAAGAGA
* * *
1628 TTATCAAAATGTCATATCGAGGTTAT-AAGAATTTCATAGTGTGG
1 TTATCAAAATTTCATA-GGAGGTTATCAA-AATTTCATA-TGAGG
* * **
1672 TTAACAAAATTTCATAAGGAGGTTA-CTAATATTTCATGGGGAGG
1 TTATCAAAATTTCAT-AGGAGGTTATC-AAAATTTCAT-ATGAGG
*
1716 TTATCAAAATTTCATAGTGTGGTTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATAG-GAGGTTATCAAAATTTCATATG-AGG
* * * *
1760 TTATAAAAGTCTCAATTTCATAAGGA-G-TACCAAAATATGATA-GAAGG
1 TTAT-CAA-----AATTTCAT-AGGAGGTTATCAAAATTTCATATG-AGG
* * * * *
1807 TTATC-AAATCTCATA-GAGTGATTGTCGATATTTCATAGAGATTGG
1 TTATCAAAATTTCATAGGAG-G-TTATCAAAATTTCATA-TGA--GG
* **
1852 ATTATCAAAATTT-ATAGGAAGATTATCAAAATTTCATAGTGTTG
1 -TTATCAAAATTTCATAGG-AGGTTATCAAAATTTCATA-TGAGG
* * * * *
1896 TTATCAAAATTTCAAAGCGAGGTTATCAAAATTACACAATGTGA
1 TTATCAAAATTTCATAG-GAGGTTATCAAAATTTCA-TATGAGG
* * * * *
1940 TCATCAAAATTTCATAGAGGGGTCAACAAAATTTTATA-GAGAG
1 TTATCAAAATTTCATAG-GAGGTTATCAAAATTTCATATGAG-G
* * * * *
1983 TTATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGA
1 TTATCAAAATTTCAT-AGGAGGTTATCAAAATTTC-ATATGAGG
* * *
2027 TTACCAAAATTTCATA-GTGG---T----ATTT-ATAGGGAGG
1 TTATCAAAATTTCATAGGAGGTTATCAAAATTTCATA-TGAGG
* * *
2061 TTATCAAAATTTCATAGTATGGTTA-CCAAA--T--TAGGAAGG
1 TTATCAAAATTTCATAGGA-GGTTATCAAAATTTCATATG-AGG
* * * * * *
2100 TTATTAAACTTTTATTATGGA-GTAATCAAAATTTCATAGTTTA-C
1 TTATCAAAATTTCA-TA-GGAGGTTATCAAAATTTCATA--TGAGG
* * *
2144 TTTTCAAAATTTCATAAGAGGGTTATCAAAATTTCATA-GTATG
1 TTATCAAAATTTCATAGGA-GGTTATCAAAATTTCATATG-AGG
* * * *
2187 TAGACCAAAATTTCATAGGGAGATTAACAAAATTTCATAATGAGG
1 T-TATCAAAATTTCATA-GGAGGTTATCAAAATTTCAT-ATGAGG
* ** *
2232 TTATAAAAAAATCATAGGGAGGTTATCAAAA-TT--TGT-A-G
1 TTATCAAAATTTCATA-GGAGGTTATCAAAATTTCATATGAGG
* * * * *
2270 TCATCAAGATTTCATAAGGAGGTTATAAAAATTTTATAGGGAGG
1 TTATCAAAATTTCAT-AGGAGGTTATCAAAATTTCATA-TGAGG
* * *
2314 TTTATTAAAATTTTATAGGAAGGTTTATC-AAA-TTCATAGCGAGG
1 -TTATCAAAATTTCATAGG-AGG-TTATCAAAATTTCATA-TGAGG
* * *
2358 TTATCACAATTTCATAGTGTGATTATCAAAATT
1 TTATCAAAATTTCATAG-GAGGTTATCAAAATT
2391 CCAGAGTGTG
Statistics
Matches: 523, Mismatches: 122, Indels: 148
0.66 0.15 0.19
Matches are distributed among these distances:
33 2 0.00
34 17 0.03
35 3 0.01
36 2 0.00
38 28 0.05
39 25 0.05
40 16 0.03
41 4 0.01
42 24 0.05
43 68 0.13
44 228 0.44
45 37 0.07
46 28 0.05
47 15 0.03
48 14 0.03
49 1 0.00
50 9 0.02
51 2 0.00
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (42 bp):
TTATCAAAATTTCATAGGAGGTTATCAAAATTTCATATGAGG
Found at i:2172 original size:22 final size:21
Alignment explanation
Indices: 2147--2390 Score: 78
Period size: 22 Copynumber: 11.4 Consensus size: 21
2137 AGTTTACTTT
2147 TCAAAATTTCATAAGAGGGTTA
1 TCAAAATTTCAT-AGAGGGTTA
* *
2169 TCAAAATTTCATAGTA-TGTAGA
1 TCAAAATTTCATAG-AGGGT-TA
*
2191 CCAAAATTTCATAG-GGAGATTA
1 TCAAAATTTCATAGAGG-G-TTA
*
2213 ACAAAATTTCATA-ATGAGGTTA
1 TCAAAATTTCATAGA-G-GGTTA
* ** *
2235 TAAAAAAATCATAGGGAGGTTA
1 TCAAAATTTCATAGAG-GGTTA
* *
2257 TCAAAATTT-GT--A--GTCA
1 TCAAAATTTCATAGAGGGTTA
*
2273 TCAAGATTTCATA-AGGAGGTTA
1 TCAAAATTTCATAGA-G-GGTTA
* * *
2295 TAAAAATTTTATAGGGAGGTTTA
1 TCAAAATTTCATA--GAGGGTTA
* * *
2318 TTAAAATTTTATAGGAAGGTTTA
1 TCAAAATTTCATA-G-AGGGTTA
*
2341 TC-AAA-TTCATAGCGAGGTTA
1 TCAAAATTTCATAGAG-GGTTA
* * *
2361 TCACAATTTCATAGTGTGATTA
1 TCAAAATTTCATAGAG-GGTTA
2383 TCAAAATT
1 TCAAAATT
2391 CCAGAGTGTG
Statistics
Matches: 166, Mismatches: 34, Indels: 44
0.68 0.14 0.18
Matches are distributed among these distances:
16 11 0.07
17 1 0.01
18 1 0.01
19 1 0.01
20 7 0.04
21 12 0.07
22 103 0.62
23 27 0.16
24 2 0.01
25 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (21 bp):
TCAAAATTTCATAGAGGGTTA
Found at i:2323 original size:23 final size:23
Alignment explanation
Indices: 2278--2341 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
2268 AGTCATCAAG
* *
2278 ATTTCATAAGGAGG-TTATAAAA
1 ATTTTATAGGGAGGTTTATAAAA
*
2300 ATTTTATAGGGAGGTTTATTAAA
1 ATTTTATAGGGAGGTTTATAAAA
*
2323 ATTTTATAGGAAGGTTTAT
1 ATTTTATAGGGAGGTTTAT
2342 CAAATTCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 12 0.32
23 25 0.68
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.41
Consensus pattern (23 bp):
ATTTTATAGGGAGGTTTATAAAA
Found at i:2358 original size:21 final size:22
Alignment explanation
Indices: 2278--2374 Score: 67
Period size: 23 Copynumber: 4.4 Consensus size: 22
2268 AGTCATCAAG
* *
2278 ATTTCATAAG-GAGGTTATAAAA
1 ATTTCAT-AGCGAGGTTATCACA
* * * *
2300 ATTTTATAGGGAGGTTTATTAAA
1 ATTTCATAGCGAGG-TTATCACA
*
2323 ATTTTATAG-GAAGGTTTATCA-A
1 ATTTCATAGCG-AGG-TTATCACA
2345 A-TTCATAGCGAGGTTATCACA
1 ATTTCATAGCGAGGTTATCACA
2366 ATTTCATAG
1 ATTTCATAG
2375 TGTGATTATC
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.09
21 13 0.20
22 21 0.32
23 25 0.38
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (22 bp):
ATTTCATAGCGAGGTTATCACA
Found at i:2398 original size:22 final size:22
Alignment explanation
Indices: 2358--2404 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2348 CATAGCGAGG
* * *
2358 TTATCACAATTTCATAGTGTGA
1 TTATCAAAATTCCAGAGTGTGA
2380 TTATCAAAATTCCAGAGTGTGA
1 TTATCAAAATTCCAGAGTGTGA
2402 TTA
1 TTA
2405 CTAACAATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (22 bp):
TTATCAAAATTCCAGAGTGTGA
Found at i:2505 original size:23 final size:23
Alignment explanation
Indices: 2467--2531 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 23
2457 TCATATGAAG
* * **
2467 GTTATCAACATCTCATAGTGTTA
1 GTTATCAAAATTTCATAGTGGAA
*
2490 GTTATCAAAATTTCATCG-GGAA
1 GTTATCAAAATTTCATAGTGGAA
*
2512 GTTGTCAAAATTTCATAGTG
1 GTTATCAAAATTTCATAGTG
2532 CGGTCTTCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (23 bp):
GTTATCAAAATTTCATAGTGGAA
Found at i:2638 original size:22 final size:22
Alignment explanation
Indices: 2607--2660 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
2597 AAGGTTCTTG
* * *
2607 AAATTCCATAGTATCGTTATCA
1 AAATTTCATAGGAACGTTATCA
*
2629 AAATTTCATAGGAAGGTTATCA
1 AAATTTCATAGGAACGTTATCA
*
2651 AACTTTCATA
1 AAATTTCATA
2661 AGGAGGTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
AAATTTCATAGGAACGTTATCA
Found at i:7225 original size:29 final size:30
Alignment explanation
Indices: 7177--7236 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 30
7167 TCTCTTAGTC
7177 TCTGCGTTTTCTCTTAAAAAAAA-AAATTT
1 TCTGCGTTTTCTCTTAAAAAAAATAAATTT
7206 TCTGCGTTTTCAATC-T-AAAAAAATAAATTT
1 TCTGCGTTTTC--TCTTAAAAAAAATAAATTT
7236 T
1 T
7237 TTTTATTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
29 18 0.64
30 8 0.29
31 2 0.07
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (30 bp):
TCTGCGTTTTCTCTTAAAAAAAATAAATTT
Found at i:7227 original size:30 final size:29
Alignment explanation
Indices: 7177--7236 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
7167 TCTCTTAGTC
7177 TCTGCGTTTTCTCTTAAAAAAAAAAATTT
1 TCTGCGTTTTCTCTTAAAAAAAAAAATTT
*
7206 TCTGCGTTTTCAATC-TAAAAAAATAAATTT
1 TCTGCGTTTTC--TCTTAAAAAAAAAAATTT
7236 T
1 T
7237 TTTTATTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 11 0.39
30 15 0.54
31 2 0.07
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (29 bp):
TCTGCGTTTTCTCTTAAAAAAAAAAATTT
Found at i:10123 original size:54 final size:54
Alignment explanation
Indices: 10064--10239 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
10054 GACCGACCAT
*
10064 CCGAGCCATCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAG
1 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAG
* * ** *** * * *
10118 CCGAGCCACCTACCCGATCATC-CATAC-CTTTC-TCCGCG--CCACGTGCCCAACCCG
1 CCGAGCCACCTGCCTGGCCA-CGC-T-CGGACTCATCCGCGCACCAC--GCCCGATCAG
*
10172 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCTCGATCAG
1 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAG
10226 CCGAGCCACCTGCC
1 CCGAGCCACCTGCC
10240 CAGTCATCCG
Statistics
Matches: 90, Mismatches: 22, Indels: 20
0.68 0.17 0.15
Matches are distributed among these distances:
52 5 0.06
53 4 0.04
54 72 0.80
55 4 0.04
56 5 0.06
ACGTcount: A:0.17, C:0.48, G:0.21, T:0.14
Consensus pattern (54 bp):
CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAG
Found at i:10254 original size:108 final size:107
Alignment explanation
Indices: 10064--10419 Score: 469
Period size: 108 Copynumber: 3.2 Consensus size: 107
10054 GACCGACCAT
*
10064 CCGAGCCATCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCT
1 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCT
* * * **
10129 ACCCGATCATCCATACCTTTCTCCGCGCCACGTGCCCAACCCG
66 ACCCG-TCATCCGTACCTTTCTCCGTGCCATGTGCCCGGCCCG
*
10172 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCTCGATCAGCCGAGCCACCT
1 CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCT
*
10237 GCCCAGTCATCCGTACCTTTCTCCGTGCCATGTGCCCGGCCCG
66 ACCC-GTCATCCGTACCTTTCTCCGTGCCATGTGCCCGGCCCG
*
10280 CCGAGCCACCTGTCCGACCATCTACGTGGCCACGCTCGGACTCATTCGCGCACCACGCCCGATCA
1 CCGAGCCACC--T--G-----C--C-TGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCA
*
10345 GCCGAGCCACCTACCCGGTCATCCGTATCTTTCTCCGTGCCATGTGCCCGGCCCG
54 GCCGAGCCACCTACCC-GTCATCCGTACCTTTCTCCGTGCCATGTGCCCGGCCCG
* *
10400 CCGAGCTACCTGCCCGGCCA
1 CCGAGCCACCTGCCTGGCCA
10420 TACCCGGCAC
Statistics
Matches: 220, Mismatches: 15, Indels: 26
0.84 0.06 0.10
Matches are distributed among these distances:
108 113 0.51
109 2 0.01
110 1 0.00
111 1 0.00
112 1 0.00
116 1 0.00
117 1 0.00
118 1 0.00
119 1 0.00
120 98 0.45
ACGTcount: A:0.15, C:0.46, G:0.22, T:0.16
Consensus pattern (107 bp):
CCGAGCCACCTGCCTGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCT
ACCCGTCATCCGTACCTTTCTCCGTGCCATGTGCCCGGCCCG
Found at i:10399 original size:120 final size:120
Alignment explanation
Indices: 10186--10420 Score: 398
Period size: 120 Copynumber: 2.0 Consensus size: 120
10176 GCCACCTGCC
* *
10186 TGGCCACGCTCGGACTCATCCGCGCACCACGCTCGATCAGCCGAGCCACCTGCCCAGTCATCCGT
1 TGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCTACCCAGTCATCCGT
*
10251 ACCTTTCTCCGTGCCATGTGCCCGGCCCGCCGAGCCACCTGTCCGACCATCTACG
66 ACCTTTCTCCGTGCCATGTGCCCGGCCCGCCGAGCCACCTGCCCGACCATCTACG
* *
10306 TGGCCACGCTCGGACTCATTCGCGCACCACGCCCGATCAGCCGAGCCACCTACCCGGTCATCCGT
1 TGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCTACCCAGTCATCCGT
* * *
10371 ATCTTTCTCCGTGCCATGTGCCCGGCCCGCCGAGCTACCTGCCCGGCCAT
66 ACCTTTCTCCGTGCCATGTGCCCGGCCCGCCGAGCCACCTGCCCGACCAT
10421 ACCCGGCACC
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 107 1.00
ACGTcount: A:0.14, C:0.45, G:0.23, T:0.18
Consensus pattern (120 bp):
TGGCCACGCTCGGACTCATCCGCGCACCACGCCCGATCAGCCGAGCCACCTACCCAGTCATCCGT
ACCTTTCTCCGTGCCATGTGCCCGGCCCGCCGAGCCACCTGCCCGACCATCTACG
Done.