Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015286.1 Corchorus olitorius cultivar O-4 contig15319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19382

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9873--9973
27
3.7
27
82
1
112
40
26
12
19
1.88
10431--10696
50
5.3
50
95
0
469
30
12
26
31
1.92
10783--10957
92
1.9
92
92
1
289
39
13
18
28
1.89
10867--11037
79
2.2
79
93
3
290
36
14
20
29
1.92
10783--11108
171
1.9
170
90
3
521
37
12
19
30
1.89
10949--11176
90
2.5
90
85
6
300
35
11
19
32
1.88
11576--11820
50
4.9
50
92
2
386
35
15
16
32
1.90
11576--11821
99
2.5
99
91
3
404
35
15
16
32
1.90
12187--12229
20
2.1
21
86
4
61
39
23
18
18
1.92
13116--13149
15
2.2
16
94
5
61
11
0
11
76
1.02
13112--13163
26
2.0
27
84
3
70
15
1
13
69
1.28
18562--18599
16
2.3
17
86
4
51
13
5
7
73
1.22

Tables:   1

The End!