genome.fa.s15287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015287.1 Corchorus olitorius cultivar O-4 contig15320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206952

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375--1475	27	3.7	27	77	10	107	38	24	14	21	1.92
1756--1906	18	8.1	18	71	13	117	33	7	10	49	1.65
1746--1943	28	7.0	28	77	10	197	33	6	11	48	1.63
1756--1943	57	3.3	57	100	0	376	33	6	10	49	1.63
1888--1975	39	2.3	38	90	2	131	32	4	13	48	1.63
1756--1971	114	1.9	113	91	3	353	33	6	11	49	1.63
1746--1975	10	24.1	10	69	15	112	33	5	12	48	1.64
1927--1979	18	2.8	18	72	16	54	33	1	15	49	1.55
1956--2014	12	5.1	12	76	15	54	33	1	11	52	1.48
6636--6723	35	2.5	35	83	5	108	54	9	1	35	1.40
6686--6721	18	1.9	19	88	5	56	58	8	0	33	1.28
7247--7286	13	2.7	15	85	14	57	55	5	0	40	1.22
7560--7672	21	5.4	21	91	2	158	28	18	26	26	1.98
8816--9375	33	15.9	33	79	11	546	28	20	0	50	1.53
8816--9379	73	8.0	69	83	8	692	28	20	0	50	1.53
14891--14938	20	2.3	21	82	10	55	20	4	4	70	1.21
20034--20071	2	19.5	2	89	5	60	50	47	0	2	1.15
23784--23824	20	2.0	21	90	4	66	60	4	24	9	1.47
24907--24946	18	2.2	18	86	4	53	45	5	20	30	1.72
30287--30324	18	2.1	19	90	5	60	18	39	13	28	1.88
30368--30424	30	1.9	30	92	0	96	21	28	19	31	1.97
32528--32569	21	2.0	21	95	0	75	52	7	28	11	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34869--34904	19	1.9	18	88	5	54	33	25	2	38	1.70
34869--34915	11	4.7	10	80	17	53	31	23	6	38	1.80
39297--39433	53	2.6	53	89	0	202	27	34	18	19	1.95
40128--40190	28	2.2	28	85	0	90	28	23	30	17	1.97
40142--40196	28	2.0	28	85	0	74	29	29	25	16	1.97
40317--40363	24	2.0	24	82	0	58	25	31	27	14	1.95
40403--40444	22	1.9	22	85	9	59	45	21	11	21	1.84
41027--41056	2	15.0	2	92	0	51	46	0	0	53	1.00
50479--50505	1	27.0	1	100	0	54	100	0	0	0	0.00
52752--52790	17	2.2	18	86	4	53	7	17	48	25	1.74
53215--53296	31	2.6	31	75	12	78	59	7	3	29	1.41
53726--53776	23	2.2	23	82	0	57	9	21	45	23	1.82
58292--58318	6	4.5	6	100	0	54	18	48	0	33	1.49
64362--64566	22	9.4	22	77	11	154	39	14	11	35	1.81
64382--64542	44	3.7	44	82	3	180	37	14	10	37	1.80
64362--64566	66	3.1	66	81	4	220	39	14	11	35	1.81
64494--64633	73	1.9	73	81	8	167	40	13	8	37	1.75
64636--64918	22	12.8	22	69	12	159	31	20	9	37	1.86
64852--64935	44	1.9	44	92	0	141	30	15	15	38	1.89
64851--64933	22	3.7	21	74	16	69	31	15	14	38	1.88
66104--66130	5	5.4	5	100	0	54	59	0	18	22	1.38
71013--71040	14	2.0	14	100	0	56	50	21	14	14	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71910--71966	29	2.0	29	92	0	96	21	21	7	50	1.71
76674--77059	178	2.2	178	84	2	490	37	15	13	33	1.87
77658--77714	21	2.7	21	91	0	96	21	29	15	33	1.94
80140--80210	30	2.4	30	81	9	83	35	12	7	45	1.70
99671--99710	21	1.9	21	89	0	62	20	35	20	25	1.96
99973--100556	292	2.0	291	97	0	1105	35	19	19	26	1.95
100553--100889	124	2.7	125	83	4	428	35	16	17	30	1.92
101985--102060	38	2.0	38	100	0	152	39	13	15	31	1.86
104004--104093	33	2.7	33	84	0	108	36	20	6	36	1.79
104548--104646	30	3.3	30	82	10	139	12	19	36	32	1.88
110408--110434	2	13.5	2	100	0	54	48	0	0	51	1.00
110780--110835	2	28.0	2	84	13	71	44	3	1	50	1.29
112900--113016	60	2.0	60	93	1	200	34	14	12	38	1.84
112901--113028	59	2.2	60	89	1	195	33	17	14	34	1.90
115217--115254	19	2.0	19	100	0	76	36	5	10	47	1.61
116015--116039	7	3.6	7	100	0	50	12	0	40	48	1.40
118443--118490	24	2.0	24	100	0	96	25	25	0	50	1.50
120522--120602	42	1.9	42	94	0	144	29	8	14	46	1.75
125227--125317	41	2.2	41	100	0	182	20	40	13	25	1.89
134228--134261	15	2.3	15	89	0	50	20	26	11	41	1.87
145876--145924	25	2.0	25	100	0	98	12	32	20	34	1.90
146765--146813	25	2.0	25	100	0	98	12	32	20	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146810--146851	21	2.0	21	86	9	59	47	35	0	16	1.47
149257--149308	23	2.2	24	83	12	65	15	9	3	71	1.27
156540--156582	22	2.0	22	100	0	86	55	4	18	20	1.60
164941--164980	21	1.9	21	94	0	71	20	15	20	45	1.86
164946--164990	21	2.1	21	88	8	65	20	15	20	44	1.87
168455--168510	29	1.9	29	92	0	94	21	19	21	37	1.94
168530--168562	11	3.0	11	90	0	57	36	3	24	36	1.71
168545--168624	41	2.0	41	100	0	160	28	17	17	36	1.93
188734--188768	18	1.9	18	100	0	70	45	5	20	28	1.73
201860--201986	45	2.8	45	92	3	211	32	5	22	40	1.77
203442--203481	2	20.0	2	94	0	71	0	47	2	50	1.14
206554--206633	29	2.7	30	90	3	117	28	17	12	41	1.86
206787--206867	30	2.6	31	86	3	119	41	9	16	32	1.81

Tables:   1

The End!