genome.fa.s15288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015288.1 Corchorus olitorius cultivar O-4 contig15321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38092

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99--175	32	2.5	31	86	2	100	45	14	16	23	1.84
248--273	13	2.0	13	100	0	52	53	0	7	38	1.30
2003--2041	18	2.2	18	85	0	51	28	5	38	28	1.78
3474--3529	29	1.9	29	92	0	94	26	8	10	53	1.65
5506--5592	31	2.9	31	89	3	133	36	11	21	29	1.89
11264--11343	30	2.6	30	84	5	90	31	17	10	41	1.82
11495--11560	31	2.2	30	91	5	107	39	13	15	31	1.86
11830--12184	179	2.0	180	90	2	563	51	3	9	36	1.50
21708--21757	21	2.4	21	89	0	73	12	24	48	16	1.79
24345--24414	24	2.8	25	83	14	83	34	14	10	41	1.79
24441--24531	45	1.9	49	86	8	136	57	14	7	20	1.62
26987--27046	31	2.0	31	83	6	79	48	13	11	26	1.76
29306--29383	30	2.8	27	76	14	77	16	35	21	25	1.94
29330--29414	30	2.8	30	87	0	116	17	40	21	21	1.92
32774--32805	12	2.8	12	95	4	57	68	0	0	31	0.90
33538--33664	45	2.8	45	93	0	227	39	21	6	33	1.78
35463--35522	27	2.2	27	82	8	68	45	3	3	48	1.35
35490--35739	132	2.0	127	85	8	341	49	2	10	37	1.51
35643--35686	23	1.9	23	81	9	54	59	0	11	29	1.32
36062--36120	31	1.9	31	89	0	91	49	8	16	25	1.74
36798--36891	45	2.2	43	90	7	147	40	22	3	34	1.70
37735--37841	51	2.1	51	98	0	205	38	10	11	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37968--38029	25	2.6	24	84	5	81	59	4	4	30	1.39

Tables:   1

The End!