Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015290.1 Corchorus olitorius cultivar O-4 contig15323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36561

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--53
2
24.0
2
95
4
89
48
0
2
48
1.12
124--324
41
4.7
43
82
7
225
23
11
26
38
1.89
112--324
84
2.5
85
85
3
304
24
10
26
37
1.89
1801--1835
11
3.2
11
95
0
61
17
28
25
28
1.97
5541--5604
30
2.1
30
100
0
128
12
3
21
62
1.43
7323--7356
2
17.5
2
87
6
52
50
2
0
47
1.16
7967--7998
2
17.0
2
87
12
50
0
53
0
46
1.00
23154--23190
19
2.0
19
94
5
67
32
0
0
67
0.91
23160--23201
19
2.2
19
86
0
57
38
2
0
59
1.10
23461--23511
21
2.2
22
80
16
59
35
1
0
62
1.06
24019--24044
2
13.0
2
100
0
52
50
0
0
50
1.00
24183--24237
12
4.5
12
90
4
83
32
14
23
29
1.94
24183--24237
25
2.2
24
90
3
83
32
14
23
29
1.94
24472--24525
26
2.1
26
86
3
74
33
5
3
57
1.40
25339--25374
3
12.3
3
94
5
65
33
36
0
30
1.58
27878--27915
19
2.0
19
100
0
76
52
5
15
26
1.64
28693--28718
10
2.6
10
100
0
52
30
7
23
38
1.83
28829--28867
12
3.6
12
74
25
50
30
15
28
25
1.96
29260--29294
15
2.3
15
100
0
70
60
5
11
22
1.52
29351--29395
2
23.0
2
90
4
74
51
46
2
0
1.13
29397--29432
2
18.0
2
100
0
72
50
0
0
50
1.00
30218--30246
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31973--32037
30
2.2
30
94
0
112
26
9
23
41
1.84
33811--33846
18
2.0
18
100
0
72
38
27
5
27
1.79
34011--34064
3
18.0
3
100
0
108
66
0
0
33
0.92
36386--36430
21
2.1
21
83
0
54
15
28
11
44
1.81

Tables:   1

The End!