Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015293.1 Corchorus olitorius cultivar O-4 contig15326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6136
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:4098 original size:16 final size:16

Alignment explanation


    Indices: 4061--4091  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       4051 TTTCAGGATG

                            
       4061 GAGCAACCAAGCAAGC
          1 GAGCAACCAAGCAAGC

                  *        
       4077 GAGCAAGCAAGCAAG
          1 GAGCAACCAAGCAAG

       4092 TTAGCAACAC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.45, C:0.26, G:0.29, T:0.00


Consensus pattern (16 bp):   
GAGCAACCAAGCAAGC

Found at i:5903 original size:30 final size:29

Alignment explanation


    Indices: 5860--5916  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       5850 TTAGGATTAG

                                         
       5860 TTATTTATGCTTTAATTTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
       5888 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

       5917 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT
Done.