Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015295.1 Corchorus olitorius cultivar O-4 contig15328, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25761

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5144--5269
65
1.9
66
96
1
236
26
21
3
49
1.64
5207--5313
55
2.0
54
88
1
160
25
19
2
52
1.60
6519--6547
13
2.1
14
93
6
51
17
10
0
72
1.11
7007--7035
13
2.1
14
93
6
51
24
10
0
65
1.23
6254--7703
489
3.0
488
89
2
2171
37
11
13
37
1.80
16289--16313
12
2.1
12
100
0
50
40
8
0
52
1.31
16625--16817
22
8.7
22
69
12
90
38
13
10
36
1.81
17971--18322
119
3.0
118
91
2
598
33
7
24
34
1.83
18632--18705
5
13.3
6
81
16
65
55
1
1
41
1.17
18633--18705
12
5.8
12
90
6
101
56
1
1
41
1.16
24477--25200
35
20.3
35
83
8
822
42
17
13
26
1.86
24691--24749
19
3.3
19
65
13
52
45
23
13
16
1.83
24793--24848
16
3.0
20
67
32
61
41
14
21
23
1.89

Tables:   1

The End!