Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015297.1 Corchorus olitorius cultivar O-4 contig15330, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39440

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1050--1634
39
15.1
38
85
7
784
31
20
15
31
1.94
1050--1634
77
7.5
77
86
6
808
31
20
15
31
1.94
1650--1904
54
4.8
54
81
8
290
34
22
14
29
1.93
1968--2039
23
3.0
24
83
6
74
43
4
22
30
1.72
2063--2118
26
2.2
25
83
3
67
33
19
23
23
1.97
2089--2700
106
5.8
105
82
4
617
40
21
20
17
1.91
2114--2700
141
4.2
139
81
5
617
40
21
20
17
1.91
2089--2700
35
17.4
35
80
4
588
40
21
20
17
1.91
3785--3848
6
10.5
6
77
15
60
1
14
1
82
0.81
3785--3848
14
4.7
13
80
16
67
1
14
1
82
0.81
3778--3831
26
2.1
26
86
6
74
1
18
1
77
0.95
3785--3837
21
2.5
21
87
3
70
0
16
1
81
0.79
3785--3848
27
2.3
28
86
2
85
1
14
1
82
0.81
3906--3952
21
2.2
21
84
3
58
29
10
6
53
1.60
3904--3961
22
2.6
22
81
8
64
31
13
6
48
1.69
4525--4575
14
3.7
13
80
17
50
37
11
5
45
1.65
7349--7638
52
5.6
52
93
2
458
37
15
19
28
1.92
7449--7535
27
3.3
27
64
6
79
35
13
20
29
1.92
7597--7751
36
4.2
36
82
6
170
33
14
20
32
1.92
7617--7746
36
3.6
36
90
3
199
33
14
20
31
1.92
7617--7754
73
1.9
72
89
4
215
34
14
19
31
1.92
21612--21687
32
2.3
32
84
4
89
5
34
46
14
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30699--30849
32
4.8
32
80
7
143
33
21
21
24
1.97
30697--30849
64
2.4
65
76
7
163
33
20
20
24
1.97
32852--32939
44
2.0
44
88
0
131
34
7
25
32
1.85
34021--34180
60
2.7
60
92
0
259
26
20
18
34
1.96
37402--37602
31
6.5
31
90
2
287
16
25
26
30
1.97

Tables:   1

The End!