Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015299.1 Corchorus olitorius cultivar O-4 contig15332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12241

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
871--969
27
3.7
27
93
0
144
40
25
17
17
1.90
1674--1705
11
2.6
13
90
9
50
68
9
0
21
1.17
3274--3324
6
8.3
6
85
10
68
1
17
0
80
0.81
3274--3313
13
3.2
13
89
7
64
0
17
0
82
0.67
6135--6178
21
2.1
21
91
0
70
22
4
36
36
1.75
7793--7838
20
2.3
20
88
3
67
47
8
17
26
1.76
8307--8381
23
3.2
23
64
14
62
17
26
13
42
1.86
8222--8495
50
5.5
50
89
3
376
24
25
12
37
1.90
8250--8495
101
2.5
97
86
5
280
23
26
13
36
1.91
8727--8851
65
1.9
64
91
1
205
29
20
14
35
1.92
8726--9118
67
5.9
67
87
3
442
25
22
13
37
1.92
10948--10991
23
2.0
23
86
4
63
25
6
15
52
1.68
10956--10991
12
3.1
12
96
4
65
27
5
16
50
1.68
10958--10993
11
3.2
11
96
4
63
25
2
16
55
1.55
11278--11336
14
4.3
13
87
10
66
38
15
6
38
1.74
11301--11336
15
2.5
15
90
4
56
38
13
8
38
1.75

Tables:   1

The End!