Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015309.1 Corchorus olitorius cultivar O-4 contig15342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5383
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:424 original size:3 final size:3

Alignment explanation


    Indices: 416--454  Score: 78
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        406 AATTTTACAT

                                                               
        416 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

        455 CACTAATTTC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Done.