Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001531.1 Corchorus olitorius cultivar O-4 contig01531, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36


Found at i:720 original size:52 final size:52

Alignment explanation


    Indices: 629--732  Score: 154
    Period size: 52  Copynumber: 2.0  Consensus size: 52

        619 TCTAAAATAA

                                      *       *                 
        629 ACTACCTTGGGACACTCAAAATAACGTCTTCATTGGATTCATATTTCTCATG
          1 ACTACCTTGGGACACTCAAAATAACGCCTTCATTAGATTCATATTTCTCATG

                *      *                  *               *     
        681 ACTATCTTGGGGCACTCAAAATAACGCCTTTATTAGATTCATATTTTTCATG
          1 ACTACCTTGGGACACTCAAAATAACGCCTTCATTAGATTCATATTTCTCATG

        733 TTCTTGCACT


Statistics
Matches: 46,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  52   46  1.00

ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37


Consensus pattern (52 bp):   
ACTACCTTGGGACACTCAAAATAACGCCTTCATTAGATTCATATTTCTCATG
Done.