Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015312.1 Corchorus olitorius cultivar O-4 contig15345, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3977
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31


Found at i:3475 original size:15 final size:15

Alignment explanation


    Indices: 3455--3490  Score: 63
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       3445 AAATTGGGGG

                           
       3455 ATAATCAATCCAAAA
          1 ATAATCAATCCAAAA

                           
       3470 ATAATCAATCCAAAA
          1 ATAATCAATCCAAAA

             *    
       3485 ACAATC
          1 ATAATC

       3491 CAACAACAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.58, C:0.22, G:0.00, T:0.19


Consensus pattern (15 bp):   
ATAATCAATCCAAAA
Done.