Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015323.1 Corchorus olitorius cultivar O-4 contig15356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1938
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1534 original size:14 final size:15

Alignment explanation


    Indices: 1509--1545  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1499 TTTGCTTTGT

                            
       1509 TTTCTAGTTTAATTG-
          1 TTTCT-GTTTAATTGC

                           
       1524 TTTCTGTTTAATTGC
          1 TTTCTGTTTAATTGC

                   
       1539 TTTCTGT
          1 TTTCTGT

       1546 CAATCTCTAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  14    9  0.43
  15   12  0.57

ACGTcount: A:0.14, C:0.11, G:0.14, T:0.62


Consensus pattern (15 bp):   
TTTCTGTTTAATTGC

Done.