Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015324.1 Corchorus olitorius cultivar O-4 contig15357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64767

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3166--3232
21
3.1
21
78
2
71
19
46
20
13
1.83
6471--6509
16
2.4
16
91
8
62
12
7
12
66
1.43
7377--7426
9
5.6
9
100
0
100
46
44
10
0
1.37
10237--10280
21
2.2
20
83
4
52
63
22
2
11
1.38
11157--11184
9
3.1
9
100
0
56
0
14
42
42
1.45
11113--11255
71
2.0
71
97
0
268
17
27
25
28
1.98
11228--11260
9
3.7
9
100
0
66
0
12
42
45
1.41
14155--14196
19
2.2
19
83
8
50
42
26
2
28
1.67
14189--14229
20
2.0
20
86
9
57
43
19
4
31
1.72
17366--17555
52
3.7
52
89
6
287
28
19
15
35
1.93
17512--17620
34
3.0
37
82
9
161
29
15
20
34
1.93
17460--17736
123
2.3
123
97
0
520
27
17
19
35
1.95
17635--17811
34
5.1
34
82
8
207
27
14
18
39
1.90
26505--26542
20
1.9
20
88
0
58
47
7
36
7
1.62
30182--30228
26
1.9
24
87
12
69
27
27
4
40
1.75
34979--35011
12
2.8
12
100
0
66
36
18
21
24
1.95
36646--36685
3
13.3
3
100
0
80
35
0
0
65
0.93
42327--42481
81
1.9
80
96
1
283
30
16
18
34
1.92
43940--43977
17
2.1
19
85
14
53
15
7
21
55
1.66
45155--45193
18
2.2
18
90
0
60
41
28
12
17
1.87
46830--46864
3
11.7
3
93
0
61
31
0
2
65
1.07
48933--48972
21
1.9
21
84
0
53
30
20
27
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50486--50518
15
2.2
15
94
0
57
36
9
15
39
1.79
50613--50653
21
2.0
21
90
9
66
21
7
19
51
1.71
50948--51025
33
2.4
33
97
0
147
19
30
2
47
1.63
52482--52560
38
2.1
38
95
4
142
26
12
27
32
1.93
56063--56095
15
2.2
15
100
0
66
36
6
15
42
1.71
56189--56230
21
2.0
21
86
9
59
23
9
16
50
1.75
57489--57521
2
16.5
2
100
0
66
51
0
48
0
1.00
57997--58050
19
2.6
21
77
19
60
38
3
18
38
1.69
61936--61969
11
3.1
11
100
0
68
8
44
8
38
1.67

Tables:   1

The End!