Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015330.1 Corchorus olitorius cultivar O-4 contig15363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47984

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9571--9674
21
5.2
20
79
9
95
39
12
17
30
1.87
9581--9674
40
2.3
40
92
0
161
40
11
17
30
1.85
10906--10990
44
1.9
44
95
0
152
28
21
23
27
1.99
19718--19760
18
2.4
18
100
0
86
25
20
23
30
1.99
21408--21438
3
10.3
3
100
0
62
0
32
0
67
0.91
23291--23322
2
16.0
2
100
0
64
50
0
0
50
1.00
25529--25567
20
2.0
20
94
0
69
38
17
20
23
1.93
27444--27482
20
2.0
20
84
0
51
43
2
7
46
1.46
33664--33689
13
2.0
13
100
0
52
46
7
7
38
1.61
35234--35262
14
2.1
14
100
0
58
27
6
17
48
1.72
35206--35292
44
2.0
44
90
0
138
35
10
13
40
1.79
35281--35317
18
2.1
18
100
0
74
40
10
21
27
1.86
35277--35318
18
2.2
20
83
16
70
40
9
21
28
1.84
41218--41817
297
2.0
300
84
3
780
33
16
17
33
1.92
41565--45761
335
12.6
333
82
5
4647
32
14
17
36
1.90
41530--45762
663
6.4
667
83
5
4744
32
14
16
36
1.90
46133--46174
19
2.2
19
91
0
66
30
19
16
33
1.94

Tables:   1

The End!