Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015332.1 Corchorus olitorius cultivar O-4 contig15365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98288

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3367--3415
1
49.0
1
83
0
62
0
0
8
91
0.41
3367--3416
14
3.5
14
94
5
91
0
0
10
90
0.47
3367--3415
20
2.5
19
90
6
80
0
0
8
91
0.41
9697--9730
15
2.3
15
94
0
59
17
5
29
47
1.71
12205--12239
12
3.0
12
91
4
54
34
11
17
37
1.85
15867--15922
26
2.2
26
84
6
71
51
21
3
23
1.63
16769--16805
18
2.1
18
94
0
65
59
2
18
18
1.50
17041--17091
26
2.0
26
100
0
102
43
0
11
45
1.40
19469--19506
11
3.5
11
89
10
51
39
0
2
57
1.12
20314--20343
14
2.1
14
100
0
60
60
0
13
26
1.34
20483--20509
13
2.1
13
100
0
54
40
0
22
37
1.54
21248--21285
19
2.0
19
94
0
67
44
0
5
50
1.24
22869--23048
89
2.0
89
100
0
360
23
28
20
27
1.99
25156--25185
15
2.0
15
93
0
51
20
16
6
56
1.62
38452--38490
13
3.0
13
85
7
53
51
23
10
15
1.73
38441--38486
13
3.3
13
82
11
56
43
28
10
17
1.82
39538--39576
19
2.1
19
95
0
69
48
25
10
15
1.76
40904--40946
22
2.0
22
85
0
59
32
9
16
41
1.80
40953--41369
22
18.9
22
68
14
153
39
9
16
34
1.81
40972--41112
65
2.2
65
79
12
155
36
4
19
39
1.73
41534--41620
38
2.3
37
80
7
95
44
9
8
37
1.66
41613--41669
23
2.5
21
78
15
60
35
7
17
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41653--41721
22
3.1
22
85
0
84
34
13
15
36
1.87
45677--45719
21
2.0
21
82
8
52
46
2
11
39
1.53
55299--55335
19
1.9
19
88
0
56
16
32
13
37
1.87
55407--55443
19
1.9
19
88
0
56
29
21
13
35
1.92
59102--59167
33
2.0
33
96
0
123
13
15
34
36
1.87
60658--60740
38
2.2
39
97
2
159
51
19
12
16
1.75
70371--70418
23
2.1
22
88
11
71
66
10
10
12
1.44
74026--74262
65
3.6
65
93
0
366
43
13
18
24
1.86
87219--87259
18
2.4
17
84
8
55
58
2
29
9
1.43
96106--96135
13
2.2
14
94
5
53
73
6
0
20
1.05
97669--97699
12
2.6
12
100
0
62
12
19
16
51
1.76

Tables:   1

The End!