genome.fa.s15333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015333.1 Corchorus olitorius cultivar O-4 contig15366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150782

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12585--12687	50	2.1	50	100	0	206	45	15	5	33	1.70
13775--13851	39	2.0	37	90	5	118	27	9	36	27	1.87
26774--26821	18	2.7	18	84	12	55	52	10	2	35	1.48
27766--27976	90	2.4	86	82	11	246	28	23	21	26	1.99
30147--30368	120	1.9	118	95	1	399	36	12	15	36	1.85
49178--49221	21	2.1	21	100	0	88	27	4	20	47	1.69
49322--49362	20	2.0	21	85	4	57	24	24	19	31	1.98
52641--52667	13	2.1	13	100	0	54	29	40	14	14	1.86
57888--57912	7	3.6	7	100	0	50	12	12	32	44	1.78
68251--68282	10	3.2	10	100	0	64	37	0	31	31	1.58
68424--68466	15	2.6	16	82	13	52	0	20	18	60	1.36
68424--68467	18	2.7	16	86	10	54	0	20	18	61	1.35
75939--75965	14	1.9	14	100	0	54	44	22	0	33	1.53
79177--79260	41	2.0	41	95	0	150	46	20	5	27	1.73
94365--94437	36	1.9	39	89	8	116	10	13	15	60	1.59
94488--94569	40	2.0	40	100	0	164	39	17	9	34	1.82
94696--94724	13	2.1	14	93	6	51	37	20	20	20	1.94
119708--119932	122	1.8	122	91	0	369	13	22	22	42	1.88
119999--120287	40	7.8	40	87	10	340	31	8	27	32	1.86
119997--120143	20	7.3	20	70	0	123	31	8	28	31	1.86
120116--120415	32	9.1	32	89	6	467	30	8	26	34	1.86
120215--120280	21	3.2	21	67	4	62	34	7	27	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120036--120432	169	2.3	175	93	4	666	31	8	26	34	1.86
120850--120897	7	6.9	7	97	0	78	0	8	29	62	1.24
123571--123626	26	2.2	26	87	6	78	21	8	5	64	1.42
124609--126065	333	4.5	327	77	8	1328	34	14	15	35	1.88
126076--127234	333	3.5	330	79	4	1288	34	14	15	35	1.88
128607--129223	321	2.0	314	84	5	814	34	15	15	35	1.89
127753--129959	821	2.6	826	89	3	3067	34	14	15	35	1.88
131312--131372	30	2.0	30	90	0	95	45	3	24	26	1.68
137511--137563	24	2.1	24	82	10	61	20	22	45	11	1.83

Tables:   1

The End!