Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015335.1 Corchorus olitorius cultivar O-4 contig15368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20822
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Found at i:1507 original size:12 final size:12
Alignment explanation
Indices: 1490--1514 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1480 CTCCTCAAGT
1490 TGCACCTGTTCC
1 TGCACCTGTTCC
1502 TGCACCTGTTCC
1 TGCACCTGTTCC
1514 T
1 T
1515 CCGCCTGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.16, T:0.36
Consensus pattern (12 bp):
TGCACCTGTTCC
Found at i:5708 original size:4 final size:4
Alignment explanation
Indices: 5699--5729 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
5689 TCGATATTAA
5699 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
5730 TTTTTTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:11277 original size:26 final size:26
Alignment explanation
Indices: 11230--11285 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
11220 TTTTAATAAA
*
11230 TATTCTTTTTAATCATTTAACTTTTT
1 TATTCTTTTTAATCATTCAACTTTTT
*
11256 TATT-TTTTTATATGATTCAACTTTTT
1 TATTCTTTTTA-ATCATTCAACTTTTT
11282 TATT
1 TATT
11286 AATTATGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (26 bp):
TATTCTTTTTAATCATTCAACTTTTT
Found at i:13075 original size:13 final size:13
Alignment explanation
Indices: 13033--13077 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
13023 TCATGCACCC
*
13033 AAAACAATTTATTT
1 AAAACAATTTA-AT
*
13047 AAAACCATTT-AT
1 AAAACAATTTAAT
13059 AAAACAATTTAAT
1 AAAACAATTTAAT
13072 AAAACA
1 AAAACA
13078 GTAATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 10 0.37
13 8 0.30
14 9 0.33
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAACAATTTAAT
Found at i:13590 original size:28 final size:29
Alignment explanation
Indices: 13554--13631 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 29
13544 TTCAAAGTAC
* *
13554 AAGGTTAAAACTGTAAATTTA-ACCTTCT
1 AAGGGTAAAACTGTAAATTTATACATTCT
*
13582 AAGGGTAAAA-TGGT-AATTTATTCATTCT
1 AAGGGTAAAACT-GTAAATTTATACATTCT
* * *
13610 TAGGGTAAAACGGTAATTTTAT
1 AAGGGTAAAACTGTAAATTTAT
13632 GCCCATACAG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
27 7 0.17
28 27 0.68
29 6 0.15
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (29 bp):
AAGGGTAAAACTGTAAATTTATACATTCT
Found at i:14374 original size:3 final size:3
Alignment explanation
Indices: 14368--14410 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
14358 CAAACTTCAA
*
14368 ATT ATT ATT ATT AAT ATT ATT -TT ATT -TT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14411 TTTTTTCCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14400 original size:22 final size:21
Alignment explanation
Indices: 14372--14416 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
14362 CTTCAAATTA
14372 TTATTATTAATATTATTTTATT
1 TTATTATTAATATTATTTT-TT
*
14394 TTATTATTATTATTATTTTTT
1 TTATTATTAATATTATTTTTT
14415 TT
1 TT
14417 CCTTTATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (21 bp):
TTATTATTAATATTATTTTTT
Found at i:14414 original size:19 final size:19
Alignment explanation
Indices: 14369--14407 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
14359 AAACTTCAAA
14369 TTATTATTATTAATATTATT
1 TTATT-TTATTAATATTATT
*
14389 TTATTTTATTATTATTATT
1 TTATTTTATTAATATTATT
14408 ATTTTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTTTATTAATATTATT
Found at i:17112 original size:279 final size:277
Alignment explanation
Indices: 16559--17115 Score: 709
Period size: 279 Copynumber: 2.0 Consensus size: 277
16549 CTTTTTGGCG
*
16559 TTGAATTATATATTTTTTATGAGTATTGTTGCAAAAAATTGGGAAAAAAATTTTCGGGTCAGTTT
1 TTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGGGAAAAAAATTTTCGGGTCAGTTT
* *
16624 TTAGCCGAAATCGTGTATAAACCATCATGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
66 TTAGCCGAAATAGTGTATAAACCATCATGGTTTTCGGCTAAAAACGCGTTTCAGGACCTGACTCA
16689 AGTTTGAATGATTTTTAGAAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAAACCACAT
131 AGTTTGAATGATTTTTAGAAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAAACCACAT
* * * *** * * * ** *
16754 TTGATTTAAGGATTTGTTTTTACGAGTTTCTGAATTTTGTTTCGATTTTATTTGAAATTAATTTG
196 TAGATTTAAGGATTTATTTATACGAGCACCTAAATCTTGTTTCGATTTTAATTGAAA-TAAAATC
16819 GACAAAAAAATGGAAAAAA
260 GA-AAAAAAATGGAAAAAA
* * * *
16838 TTGAGTTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGAGG-AAAAATTTTTCGGGTCAGTT
1 TTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTG-GGAAAAAAATTTTCGGGTCAGTT
***
16902 TTTAGCCGAAATAGTGTACT-ATTTATCACT-GTTTTCGGCTAAAAACGCGTTTCAGGACCTGAC
65 TTTAGCCGAAATAGTGTA-TAAACCATCA-TGGTTTTCGGCTAAAAACGCGTTTCAGGACCTGAC
*
16965 TC-AGTTTTGAATGATTTTT-GACAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
128 TCAAG-TTTGAATGATTTTTAGA-AGAAAGACTCCTTGAAATATCTATATTCATATAACC-AA--
*
17028 TAAGCCACATTAGATTTCACGGATTTATTTATACGAGCACCTAAATCTTGTTTCGA-TTTAATT-
188 -AA-CCACATTAGATTT-AAGGATTTATTTATACGAGCACCTAAATCTTGTTTCGATTTTAATTG
*
17091 AAA-AAAATCG-AAAATAATGGAAAAA
250 AAATAAAATCGAAAAAAAATGGAAAAA
17116 TGATATTAGA
Statistics
Matches: 242, Mismatches: 25, Indels: 22
0.84 0.09 0.08
Matches are distributed among these distances:
278 4 0.02
279 175 0.72
280 6 0.02
281 4 0.02
283 5 0.02
284 18 0.07
285 30 0.12
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (277 bp):
TTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGGGAAAAAAATTTTCGGGTCAGTTT
TTAGCCGAAATAGTGTATAAACCATCATGGTTTTCGGCTAAAAACGCGTTTCAGGACCTGACTCA
AGTTTGAATGATTTTTAGAAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAAACCACAT
TAGATTTAAGGATTTATTTATACGAGCACCTAAATCTTGTTTCGATTTTAATTGAAATAAAATCG
AAAAAAAATGGAAAAAA
Found at i:18433 original size:322 final size:321
Alignment explanation
Indices: 16838--20290 Score: 4420
Period size: 323 Copynumber: 10.7 Consensus size: 321
16828 ATGGAAAAAA
*
16838 TTGAGTTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
* *** * *
16903 TTAGCCGAAATAGTGTACTATTTATCACTGTTTTCGGCTAAAAACGCGTTTCAGGACCTGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
* *
16968 GTTTTGAATGATTTTTGACAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTAAGC
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
* *
17033 CACATTAGATTTCACGGATTTATTTATACGAGCACCTAAATCTTGTTTCGATTTAATTAAA-AAA
196 CACATTAGATTTCA-GGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAAA
* * * *
17097 -ATCG--AAAATAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGGCG
260 TTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGGCG
* * * * *
17156 TTGAGTCAT-TAATTTTTTCTGAGTATTGGGGCAAAAAAATGAGGAAAAATCTTTCAGGTCAGTT
1 TTGAGTTATAT-ATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAG--
* * * * *
17220 TTTCGAAATTTTAACCGAAATCGCGCACTAACTAAT-ACGGTTTTTTTTGGCTAAAAACGCGTTT
63 --T-----TTTTAGCCGAAATCGTGTACTAAC-CATCACGG---TTTTCGGCTAAAAACGCGTTT
* * * * *
17284 CAAGG-CCTCGGCTCAGTTTTAAATGATTTTAGGTAGAAAGACTCCTTGAAATATCTATATTCAT
117 C-GGGACCT-GACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAT
** * * * * *
17348 CTAATTAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCG
180 CTAACCAAATCTCAGCCACATTAGATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCG
* ** * * * **
17413 ATTTAATTTGAAATAAATTCGGGGGAAAAAAAAGGAAAAACGATATCAGAAGCGTG-AAAGCCCT
245 ATTTAA-TT-AAATAAATT-TGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCT
17477 TCAATTTTTTTTGGCG
307 TCAA-TTTTTTTGGCG
* * * *
17493 TTGAATCATATATTTTTTCTGAGTATTCTGG-AAAAAATTGAGGAAAAACTTTTCGGGTCAATTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTC-A---
*
17557 TTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGG
62 --G----TTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGG
17622 ACCTGACTCAGTTTTGAAT-ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACC
121 ACCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACC
* * *** * *
17686 AAATCTCAGCCACATTAGATTTCACAGATTTGTTTTTACTAGTTTCTCAATTTTGTTTCGATTTT
186 AAATCTCAGCCACATTAGATTTCA-GGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGA-TTT
* * * * ** *
17751 ATTTGAAATTAATTTGGACAAAAAAAATGGAAAACCGATATGAGAAGCCTGAAAAGA-CCATCAA
249 AATT-AAATAAATTTGGAC-AAAAAAATGGAAAAACGATATTAGAAGTGTGAAAA-ATCCTTCAA
*
17815 TCTTTTTGGCG
311 TTTTTTTGGCG
* * *
17826 TTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAGAAATTTTTCAGGTCAGTTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
17891 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
* * * *
17956 GTTTTGAATGATTTTCGGTAGAAAGACTCCTTGAAGTATCTATATTTATCTAACCAAATCTCAGC
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
* * *** * * * *
18021 CACATTGGATTTAAGGATTTGTTTTTACGAGTTTCTGAATTTTGTTTCGATATTATTTGAAATTA
196 CACATTAGATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGAT-TTAATT-AAATAA
* * ** * * *
18086 ATTTGGACAAAAAAATGGAAAACCGATATTGGAAGCCTGAAAAGA-CCATCACTCTTTTTGGCG
259 ATTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAA-ATCCTTCAATTTTTTTGGCG
* *
18149 TTGAGTTAAATATTTTTTATGAGTATTGTGGCAAAAAATTGA-GAACAAATTTTTCGGGTCAGTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA-AAATTTTTCGGGTCAGTT
* * *
18213 TGTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCT-AAAAGGCGTTACGGGACCTGACTC
65 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTC
*
18277 AGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCTAACCAAATCTCAG
130 AGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
* *** * *
18342 CCACA-TAGGATTTCAGGATTTGTTTTTACAAGTTTCTGAATTTTGTTTCGATTTAATTTGAAAT
195 CCACATTA-GATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAA-TT-AAAT
* * * *
18406 TAATTTGGACAAAAAAATGGGAAACCGATATTAGAAG-GCTGAAAAGA-CCATCAATCTTTTTTG
257 AAATTTGGACAAAAAAATGGAAAAACGATATTAGAAGTG-TGAAAA-ATCCTTCAAT-TTTTTTG
18469 GCG
319 GCG
* * * *
18472 TTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
18537 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
* * *
18602 CTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGG
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
* *
18667 CACATTAGATTTCACGGATTCGTTTTTACGAGCACCTAAATCTTGTTCCGATTTAATTAAA-AAA
196 CACATTAGATTTCA-GGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAAA
* * * * *
18731 TGTCGA-AAAAAAATGGAAAAATGATATTAGAAGTTTGAAAAATCCTTCAATTTTTTGGGCG
260 TTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGGCG
* * *
18792 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTTAGAAAAAAATTTTTTCAGGTCAGT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-GAAAAA-TTTTTCGGGTCAGT
* *
18857 TTTTAGCCGAAATCGTGTACTATCCATCACGGTTTTCGACTAAAAACGCGTTTCGGGACCTGACT
64 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACT
* ** * *
18922 CAATTTTGAATGATTTTTGATAGAAAGACT-C--GAAATATCTATATTAATCAAACCAAATCTCA
129 CAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCA
* *
18984 GCCACATTGGATTTAAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAA-AA
194 GCCACATTAGATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAA
* * *
19048 A----GTCAGAAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGGCA
259 ATTTGGACA-AAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAA-TTTTTTTGGCG
* * * * * * *
19109 TTGAGTTATATATTTTTTCTGAGTGTTGAGGCAACAAATTTAGAAAAATATTTTTCAGGTAAGTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA-ATTTTTCGGGTCAGTT
* * * ** * *
19174 TTTAGCTGAAATCATGTACTATCCATCACGGTTTTCGATTAAAAACGCGTTTCAGGATCTGACTC
65 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTC
*
19239 AATTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
130 AGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
*
19304 CCACATTAGATTTCACGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAA
195 CCACATTAGATTTCA-GGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAA
* * *
19369 AGTTT-G--AAAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATTCTTCAATTTTTGTTGGTG
259 A-TTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAATTTTT-TTGGCG
19431 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
* * *
19496 GTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAAGGCGTTACGGGACCTGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
*
19561 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCTAACCAAATCTCAGC
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
* * *** * * * * *
19626 CACA-TAGGATTTAAGGATTTGTTTTTACGTGTTTCTGAATTTTGATTCGATTTTATTTGAAATT
196 CACATTA-GATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGA-TTTAATT-AAATA
* ** * *
19690 AATTTGGACAAAAAAATGGAAAACCGATATTAGAAGCCTGAAAAGA-CCATCAATCTTTTTGGCG
258 AATTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAA-ATCCTTCAATTTTTTTGGCG
* * *
19754 TTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAACTTTTTCGGGTCAGTTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
* *
19819 TTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
*
19884 CTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
19949 CACATTAGATTTCACGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAA-AAA
196 CACATTAGATTTCA-GGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAAA
* * * * * *
20013 ATT-CAGAAAATAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGCCG
260 TTTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGGCG
* *
20074 TTGAGTTATATATTTTTT-TAAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGCTT
1 TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
* *
20138 TTAGCCGAAAACGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCCGACTCA
66 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
20203 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
131 GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
* *
20268 CAGATTAGATTTCACGATTTGTT
196 CACATTAGATTTCAGGATTTGTT
20291 AATTAACTAG
Statistics
Matches: 2787, Mismatches: 270, Indels: 156
0.87 0.08 0.05
Matches are distributed among these distances:
314 1 0.00
315 1 0.00
316 148 0.05
317 52 0.02
318 109 0.04
319 267 0.10
320 190 0.07
321 212 0.08
322 397 0.14
323 463 0.17
324 300 0.11
325 100 0.04
327 21 0.01
328 3 0.00
330 60 0.02
331 80 0.03
332 68 0.02
333 125 0.04
334 62 0.02
335 1 0.00
336 36 0.01
337 89 0.03
338 1 0.00
342 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (321 bp):
TTGAGTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
TTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTCA
GTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
CACATTAGATTTCAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAATAAAT
TTGGACAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTGGCG
Found at i:20546 original size:23 final size:23
Alignment explanation
Indices: 20516--20564 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
20506 TAGTTTTGCA
* *
20516 TGATTTTTGGCGTAAAGGCTCTC
1 TGATTTTTGGCATAAAGACTCTC
20539 TGATTTTTGGCATAAAGACTCTC
1 TGATTTTTGGCATAAAGACTCTC
20562 TGA
1 TGA
20565 AATATTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.39
Consensus pattern (23 bp):
TGATTTTTGGCATAAAGACTCTC
Found at i:20744 original size:963 final size:943
Alignment explanation
Indices: 16838--20822 Score: 3762
Period size: 959 Copynumber: 4.1 Consensus size: 943
16828 ATGGAAAAAA
* * *
16838 TTGAGTTATATA-TTTTTTCTGAGTATTGTGGTAAAAAATTGAGGAAAAATTTTTCGGGTCAGTT
1 TTGAATTATATATTTTTTTATGAGTATTGTGGCAAAAAATTGA-GAAAAATTTTTCGGGTCAGTT
* * *** * *
16902 TTTAGCCGAAATAGTGTACTATTTATCACTGTTTTCGGCTAAAAACGCGTTTCAGGACCTGACTC
65 TTTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACTC
* * * *
16967 AGTTTTGAATGATTTTTGACAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTAAG
130 AATTTTGAATGATTTTTGACAGAAAGACT-C--GAAATATCTATATTAATCAAACCAAATCTCAG
* * *
17032 CCACATTAGATTTCACGGATTTATTTATACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAA
192 CCACATTAGATTT-AAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAA
* * *
17097 ATC-GAAAATAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAA-TTTTTTTGGCGTTGA
256 GTCAGAAAA-AATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGCCATTGA
* * * * * * *
17160 GTCAT-TAATTTTTTCTGAGTATTGGGGCAAAAAAATGAGGAAAA-ATCTTTCAGGTCAGTTTTT
320 GTTATAT-ATTTTTTCTAAGTATTGAGGCAAAAAATTGAGAAAAATATTTTTCAGGTAAG-----
* * ** * * * *
17223 CGAAATTTTAACCGAAATCGCGCACTAACTAAT-ACGGTTTTTTTTGGCTAAAAACGCGTTTCAA
379 C----TTTTAGCCGAAAACATGTACTAAC-CATCACGG---TTTTCGACTAAAAACGCGTTTC-A
* * * * *
17287 GG-CCTCGGCTCAGTTTTAAATGATTTTAGGTAGAAAGACTCCTTGAAATATCTATATTCATCTA
435 GGACC-CGACTCAATTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTA
** * * * * *
17351 ATTAAATCTCAGCCACATTGGATTT-AAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
499 ACCAAATCTCAGCCACATTAGATTTCACGGATTTG--TTTA--A-CA-CTAAATC----TTAGA-
* * * * *
17415 TTAATTTGAAATAAATTCGGGGGAAAAAAAAGGAAAAACGATATCAGAAGCGTG-AAAGCCCTTC
553 -TAA-TT-AAA-AAA---AGTGGAAAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCTTC
* * *
17479 AATTTTTTTTGGCGTTGAATCATATATTTTTTCTGAGTATTCTGG-AAAAAATTGAGGAAAAACT
611 AATTTTTGTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-T
* * *
17543 -TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTA
675 ATTTCAGGTC-A-GTTTG--------TAGCCGAAATCGTGTACT-A-CATCAAGGTTTTCGGCTA
* *
17607 AAAACGCGTTTCGGGACCTGACTCAGTTTTGAAT-ATTTTTGGCAGAAAGACTCCTTGAAATATC
728 AAAACGCGTTACGGGACCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATC
* * * * * ** *
17671 TATATTCATCTAACCAAATCTCAGCCACATTA-GATTTCACAGATTTGTTTTTACTAGTTTCTCA
793 TATATTCATCGAACCAAATCCCAGCCACA-TAGGATTTAAC-GAGTTGTTTTTACGAGCATCTGA
* * * * *
17735 ATTTTGTTTCGATTTTATTTGAAATTAATTTGGACAAAAAAAATGGAAAACCGATATGAGAAGCC
856 ATTTTGATTCGATATTATTAGAAATTAATTT-GAC-AAAAAAATGGAAAAACGATATTAGAAGCC
*
17800 TGAAAAGACCATCAATCTTTTTGGCG
919 TGAAAA-ACCTTCAATCTTTTTGGCG
* * *
17826 TTGAATTATATA-TTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAGAAATTTTTCAGGTCAGTT
1 TTGAATTATATATTTTTTTATGAGTATTGTGGCAAAAAATTGA-GAAAAATTTTTCGGGTCAGTT
* *
17890 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCTGACTC
65 TTTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACTC
* * ** * * *
17955 AGTTTTGAATGATTTTCGGTAGAAAGACTCCTTGAAGTATCTATATTTATCTAACCAAATCTCAG
130 AATTTTGAATGATTTTTGACAGAAAGACT-C--GAAATATCTATATTAATCAAACCAAATCTCAG
* *** * * *
18020 CCACATTGGATTTAAGGATTTGTTTTTACGAGTTTCTGAATTTTGTTTCGATATTATTTGAAATT
192 CCACATTAGATTTAAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGAT-TTAATT-AAA--
* * ** * ** * * * *
18085 AATTTGGACA-AAAAAATGGAAAACCGATATTGGAAGCCTGAAAAGA-CCATC-ACTCTTTTTGG
253 AA---AGTCAGAAAAAATGGAAAAATGATATTAGAAGTGTGAAAA-ATCCTTCAATTTTTTTTGC
* * * * * * * *
18147 CGTTGAGTTAAATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAACAA-ATTTTTCGGGTCAG
314 CATTGAGTTATATATTTTTTCTAAGTATTGAGGCAAAAAATTGAGAAAAATATTTTTCAGGTAAG
* * * * * * *
18211 -TTTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCT-AAAAGGCGTTACGGGACCTGA
379 CTTT-TAGCCGAAAACATGTACTAACCATCACGGTTTTCGACTAAAAACGCGTTTCAGGACCCGA
* *
18274 CTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCTAACCAAATCT
443 CTCAATTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * *
18339 CAGCCACA-TAGGATTTCA-GGATTTGTTTTTACAAGTTTCTGAATTTTGTTTCGATTTAATTTG
508 CAGCCACATTA-GATTTCACGGATTTG-TTTAAC-A----CT-AA--AT-CTTAGA--TAA-TT-
* ** * * *
18402 AAATTAATTTGGACAAAAAAATGGGAAACCGATATTAGAAG-GCTGAAAAGA-CCATCAATCTTT
558 AAA-AAAAGTGGA-AAAAAAA-GGAAAAACGATATTAGAAGTG-TGAAAA-ACCCTTCAAT-TTT
* * *
18465 T-TTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGA-GAAAAAAATTTTCG
617 TGTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATA-TTTCA
* * *
18528 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGA
681 GGTCAGTTTGTAGCCGAAATCGTGTACT-A-CATCAAGGTTTTCGGCTAAAAACGCGTTACGGGA
* * * *
18593 CCTGACTCACTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAA
744 CCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCA
* * * * * *
18658 AATCTCAGGCACATTA-GATTTCACG-GATTCGTTTTTACGAGCACCTAAATCTTG-TTCCGAT-
809 AATCCCAGCCACA-TAGGATTTAACGAG-TT-GTTTTTACGAGCATCTGAATTTTGATT-CGATA
* * **
18719 TTAATTA-AAA--AATGTCGA-AAAAAAATGGAAAAATGATATTAGAAGTTTGAAAAATCCTTCA
870 TT-ATTAGAAATTAAT-TTGACAAAAAAATGGAAAAACGATATTAGAAGCCTGAAAAA-CCTTCA
18780 AT-TTTTTGGGCG
932 ATCTTTTT-GGCG
* * * *
18792 TTGAGTTATATA-TTTTTTCTGAGTATTGTGGCAAAAAATTTAGAAAAAAATTTTTTCAGGTCAG
1 TTGAATTATATATTTTTTTATGAGTATTGTGGCAAAAAA-TT-GAGAAAAA-TTTTTCGGGTCAG
* * * *
18856 TTTTTAGCCGAAATCGTGTACTATCCATCACGGTTTTCGACTAAAAACGCGTTTCGGGACCTGAC
63 TTTTTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGAC
*
18921 TCAATTTTGAATGATTTTTGATAGAAAGACTCGAAATATCTATATTAATCAAACCAAATCTCAGC
128 TCAATTTTGAATGATTTTTGACAGAAAGACTCGAAATATCTATATTAATCAAACCAAATCTCAGC
*
18986 CACATTGGATTTAAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAAGT
193 CACATTAGATTTAAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAAGT
*
19051 CAGAAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGGCATTGAGTT
258 CAGAAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGCCATTGAGTT
* * * * * *
19116 ATATATTTTTTCTGAGTGTTGAGGCAACAAATTTAGAAAAATATTTTTCAGGTAAGTTTTTAGCT
323 ATATATTTTTTCTAAGTATTGAGGCAAAAAATTGAGAAAAATATTTTTCAGGTAAGCTTTTAGCC
* * * * *
19181 GAAATCATGTACTATCCATCACGGTTTTCGATTAAAAACGCGTTTCAGGATCTGACTCAATTTTG
388 GAAAACATGTACTAACCATCACGGTTTTCGACTAAAAACGCGTTTCAGGACCCGACTCAATTTTG
19246 AATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT
453 AATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT
* *
19311 AGATTTCACGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAAAGTTTGA
518 AGATTTCACGGATTTG--TTTA--A-CA-CTAAATC----TTAGA--TAATTAAAAAAAG-TGGA
* * ** * *
19376 AAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATTCTTCAATTTTTGTTGGTGTTGAGTTATA
570 AAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCTTCAATTTTTGTTGGCGTTGAATTATA
* *
19441 TATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTTGTAGCCGAAA
635 TATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTCAGGTCAGTTTGTAGCCGAAA
* * *
19506 TCGTGTACTAACCATCACGGTTTTCGGCTAAAAAGGCGTTACGGGACCTGACTCAGTTTTGAATG
700 TCGTGTACT-A-CATCAAGGTTTTCGGCTAAAAACGCGTTACGGGACCCGACTCAGTTTTGAATG
* * *
19571 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCTAACCAAATCTCAGCCACATAGGAT
763 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGCCACATAGGAT
* * * ** * *
19636 TTAAGGATTTGTTTTTACGTGTTTCTGAATTTTGATTCGATTTTATTTGAAATTAATTTGGACAA
828 TTAACGAGTTGTTTTTACGAGCATCTGAATTTTGATTCGATATTATTAGAAATTAATTT-GACAA
* *
19701 AAAAATGGAAAACCGATATTAGAAGCCTGAAAAGACCATCAATCTTTTTGGCG
892 AAAAATGGAAAAACGATATTAGAAGCCTGAAAA-ACCTTCAATCTTTTTGGCG
*
19754 TTGAATTATATATTTTTTCTA--AGTATTGTGGCAAAAAATTGAGGAAAACTTTTTCGGGTCAGT
1 TTGAATTATATATTTTTT-TATGAGTATTGTGGCAAAAAATTGA-GAAAAATTTTTCGGGTCAGT
19817 TTTTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACT
64 TTTTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACT
* * * *
19882 CACTTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCA
129 CAATTTTGAATGATTTTTGACAGAAAGACT-C--GAAATATCTATATTAATCAAACCAAATCTCA
*
19947 GCCACATTAGATTTCACGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAA
191 GCCACATTAGATTT-AAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATT-AAAA
* *
20012 AATTCAGAAAATAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAA-TTTTTTTGCCGTT
254 AAGTCAGAAAA-AATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGCCATT
* * * *
20076 GAGTTATATATTTTTT-TAAGTATTGTGGCAAAAAATTGAGGAAAA-ATTTTTCGGGTCAGCTTT
318 GAGTTATATATTTTTTCTAAGTATTGAGGCAAAAAATTGAGAAAAATATTTTTCAGGTAAGCTTT
* * * *
20139 TAGCCGAAAACGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGACCCGACTCAG
383 TAGCCGAAAACATGTACTAACCATCACGGTTTTCGACTAAAAACGCGTTTCAGGACCCGACTCAA
20204 TTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC
448 TTTTGAATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC
* * ***
20269 AGATTAGATTTCAC-GATTTG-TT-A-A-TTAA-C-TAGA-AA-T-AAATTCG-GGAAAAAAAAA
513 ACATTAGATTTCACGGATTTGTTTAACACTAAATCTTAGATAATTAAAAAAAGTGG-AAAAAAAA
*
20323 GGAAAAACGATATTAGAAGTGTGAAAAACCCGTT-AATTTTT-TTTGCGTTGAATTATATATTTT
577 GGAAAAACGATATTAGAAGTGTGAAAAACCC-TTCAATTTTTGTTGGCGTTGAATTATATATTTT
* * *
20386 TTCTGAGTATTGTGGCAAAGAGTTGAGGAAAAAATATTT-AGGTCAGTTTTTGCAAAATTTTAGT
641 TTCTGAGTATTGTGGCAAAAAATTGAGG-AAAAATATTTCAGGTCAG--TTTG--------TAGC
* * * * * *
20450 CGAAATCGTTTACT-CATCAAGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTTAGTTTTG
695 CGAAATCGTGTACTACATCAAGGTTTTCGGCTAAAAACGCGTTAC-GGGACCCGACTCAGTTTTG
* * *
20514 CATGATTTTTGGC-GTAAAGGCTCTCTGATTTTTGGCATAAAGACTCTCTGAAATATTCATCGAA
759 AATGATTTTTGGCAG-AAAGACTC-C------TT-G----AA-A-TATCT---ATATTCATCGAA
* * * * *
20578 CTAAATCCCAGCCACATTTGGATTTAACTAGTTGTTTTTACGAGCATCTG-ATTCTTGTTTTGA-
806 CCAAATCCCAGCCACA-TAGGATTTAACGAGTTGTTTTTACGAGCATCTGAATT-TTGATTCGAT
* * *
20641 ATTACTTAGAAATTAA-TT-CCGAAAAAATGGAAAAACGATATTA-AAGACGTGAAAAACCCTTC
869 ATTA-TTAGAAATTAATTTGACAAAAAAATGGAAAAACGATATTAGAAG-CCTGAAAAA-CCTTC
20703 AATCTTTTTGGCG
931 AATCTTTTTGGCG
* * *
20716 TTGAATTATATATTTTTTTATGAGTATTGTGGCAAAAAAAATGAGAAAAATTTTTCGTGTTAG-T
1 TTGAATTATATATTTTTTTATGAGTATTGTGGC-AAAAAATTGAGAAAAATTTTTCGGGTCAGTT
* * * *
20780 TTCAACCGAAATCATGTA-C-ACCATCACGGTTTTTTGGCTAAAA
65 TTTAGCCGAAATCGTGTACCAACCATCACGG-TTTTCGGCTAAAA
Statistics
Matches: 2584, Mismatches: 287, Indels: 279
0.82 0.09 0.09
Matches are distributed among these distances:
939 52 0.02
940 51 0.02
941 10 0.00
942 1 0.00
943 2 0.00
946 30 0.01
947 34 0.01
948 1 0.00
949 16 0.01
951 1 0.00
952 3 0.00
954 3 0.00
955 1 0.00
956 1 0.00
958 36 0.01
959 267 0.10
960 182 0.07
961 88 0.03
962 258 0.10
963 252 0.10
964 118 0.05
965 166 0.06
966 119 0.05
967 8 0.00
968 111 0.04
969 1 0.00
970 82 0.03
971 93 0.04
975 1 0.00
976 5 0.00
977 8 0.00
978 26 0.01
979 155 0.06
980 37 0.01
981 8 0.00
982 1 0.00
983 5 0.00
984 22 0.01
987 31 0.01
988 195 0.08
989 3 0.00
991 2 0.00
992 1 0.00
993 90 0.03
994 7 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (943 bp):
TTGAATTATATATTTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAATTTTTCGGGTCAGTTT
TTAGCCGAAATCGTGTACCAACCATCACGGTTTTCGGCTAAAAACGCGTTTCCGGACCTGACTCA
ATTTTGAATGATTTTTGACAGAAAGACTCGAAATATCTATATTAATCAAACCAAATCTCAGCCAC
ATTAGATTTAAGGATTTGTTTTTACGAGCACCTAAATCTTGTTTCGATTTAATTAAAAAAGTCAG
AAAAAATGGAAAAATGATATTAGAAGTGTGAAAAATCCTTCAATTTTTTTTGCCATTGAGTTATA
TATTTTTTCTAAGTATTGAGGCAAAAAATTGAGAAAAATATTTTTCAGGTAAGCTTTTAGCCGAA
AACATGTACTAACCATCACGGTTTTCGACTAAAAACGCGTTTCAGGACCCGACTCAATTTTGAAT
GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAGA
TTTCACGGATTTGTTTAACACTAAATCTTAGATAATTAAAAAAAGTGGAAAAAAAAGGAAAAACG
ATATTAGAAGTGTGAAAAACCCTTCAATTTTTGTTGGCGTTGAATTATATATTTTTTCTGAGTAT
TGTGGCAAAAAATTGAGGAAAAATATTTCAGGTCAGTTTGTAGCCGAAATCGTGTACTACATCAA
GGTTTTCGGCTAAAAACGCGTTACGGGACCCGACTCAGTTTTGAATGATTTTTGGCAGAAAGACT
CCTTGAAATATCTATATTCATCGAACCAAATCCCAGCCACATAGGATTTAACGAGTTGTTTTTAC
GAGCATCTGAATTTTGATTCGATATTATTAGAAATTAATTTGACAAAAAAATGGAAAAACGATAT
TAGAAGCCTGAAAAACCTTCAATCTTTTTGGCG
Done.