Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015340.1 Corchorus olitorius cultivar O-4 contig15373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116910

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2228
330
6.7
331
85
4
2930
32
15
15
36
1.89
1--2228
664
3.4
656
85
5
2918
32
15
15
36
1.89
2273--4231
334
5.9
331
79
7
1857
33
15
14
37
1.87
2298--3646
664
2.0
660
84
6
1733
34
15
14
35
1.88
8263--8299
15
2.5
16
87
12
53
35
13
10
40
1.80
12333--12365
15
2.1
16
88
5
50
36
3
57
3
1.29
19446--19485
21
1.9
21
85
10
55
17
42
27
12
1.85
31711--31751
19
2.1
20
90
4
66
31
21
4
41
1.74
39990--40023
14
2.4
14
95
0
59
23
8
0
67
1.18
41178--41282
54
1.9
54
86
3
149
29
14
21
34
1.93
50138--50217
22
3.5
24
71
25
75
40
1
1
57
1.15
50167--50215
25
2.0
25
84
8
64
40
0
0
59
0.98
56356--56412
19
2.9
19
80
10
69
38
19
5
36
1.74
70618--70652
17
2.0
18
88
5
54
62
2
34
0
1.10
81720--81750
7
4.4
7
100
0
62
16
58
0
25
1.38
85074--85510
221
2.0
222
84
4
569
32
15
18
34
1.91
85836--86299
226
2.1
226
88
1
687
32
19
16
31
1.94
86253--86348
49
2.0
49
100
0
192
28
32
12
27
1.93
104071--104102
16
2.0
16
93
0
55
71
0
9
18
1.12
104328--104358
15
2.1
15
93
0
53
22
19
22
35
1.96
109861--109892
14
2.3
14
100
0
64
62
0
6
31
1.20
110380--110427
22
2.3
20
82
7
60
70
8
0
20
1.12

Tables:   1

The End!