genome.fa.s15341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015341.1 Corchorus olitorius cultivar O-4 contig15374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41088

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677--798	45	2.7	45	100	0	244	23	23	10	41	1.86
5784--5813	8	3.9	8	95	4	53	86	0	13	0	0.57
9739--9765	2	13.5	2	100	0	54	0	0	48	51	1.00
15188--15225	11	3.5	11	89	10	51	39	0	2	57	1.12
15380--15409	2	15.0	2	100	0	60	50	0	0	50	1.00
17412--17609	103	1.9	103	91	4	328	28	14	21	34	1.93
17413--17613	26	7.8	26	92	3	318	28	14	21	34	1.93
17888--18048	69	2.3	70	91	1	261	26	23	29	20	1.99
18974--21676	26	103.6	26	87	5	3759	28	15	22	33	1.95
22329--22389	29	2.1	29	100	0	122	13	9	21	55	1.66
22739--23082	26	13.2	26	89	6	513	28	14	23	33	1.94
22739--23082	77	4.4	78	89	5	527	28	14	23	33	1.94
22739--23075	158	2.2	155	89	6	529	28	14	23	33	1.94
23706--24014	26	11.8	26	86	4	385	27	12	22	37	1.91
23744--23812	14	5.2	14	65	25	51	26	11	23	39	1.88
23706--24128	52	8.3	52	80	11	493	28	13	21	36	1.91
23704--24128	77	5.6	77	79	11	491	28	13	22	36	1.92
23994--24029	15	2.4	15	90	0	54	27	5	22	44	1.75
23968--24055	44	2.1	41	82	6	104	27	11	21	39	1.87
24012--24128	26	4.5	26	88	6	182	29	13	22	35	1.92
23891--24129	121	2.0	120	86	5	331	28	13	21	36	1.91
23924--24108	96	2.0	93	85	7	248	28	13	22	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24012--24128	53	2.2	52	90	4	182	29	13	22	35	1.92
24097--24163	34	2.0	34	88	5	100	23	14	22	38	1.92
24128--24195	25	2.7	26	76	4	75	25	10	26	38	1.88
24206--24356	25	6.0	25	78	3	158	21	13	29	35	1.92
24206--24331	51	2.5	51	97	0	234	21	13	29	35	1.92
24359--24473	25	4.6	25	76	6	106	26	13	25	33	1.94
24392--24513	50	2.4	49	80	5	118	25	13	27	34	1.93
25404--25480	41	1.9	40	83	2	100	24	24	18	32	1.97
29196--29234	20	2.0	20	94	0	69	56	5	0	38	1.22
32716--38318	331	17.0	331	76	8	4824	36	16	14	31	1.90
32702--38319	995	5.7	993	88	4	8020	36	16	14	31	1.90
38070--38123	26	2.1	26	96	0	99	46	14	9	29	1.76
38827--38855	13	2.1	14	93	6	51	48	24	0	27	1.51
38476--40227	331	5.3	328	79	7	1783	37	16	14	31	1.89
38476--40075	663	2.4	658	81	6	1802	37	16	14	32	1.88

Tables:   1

The End!