Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015349.1 Corchorus olitorius cultivar O-4 contig15382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130237

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1750--1784
17
2.0
18
88
5
54
71
5
14
8
1.29
1840--1868
15
1.9
15
100
0
58
34
13
0
51
1.42
5709--5757
24
2.0
24
84
0
62
30
20
12
36
1.89
5825--5849
13
1.9
13
100
0
50
56
0
0
44
0.99
9344--9427
43
2.0
43
97
0
159
28
20
13
38
1.90
12332--12426
46
2.1
46
100
0
190
50
9
12
27
1.71
31169--31223
26
2.0
26
86
6
74
29
21
25
23
1.99
41793--41827
18
2.1
17
89
10
54
22
28
5
42
1.76
43010--43052
2
22.5
2
83
9
54
48
4
0
46
1.22
43254--43294
15
2.7
15
88
0
55
36
2
26
34
1.70
43261--43295
3
11.7
3
87
0
52
34
2
28
34
1.72
44498--44529
8
3.8
9
84
16
50
65
0
25
9
1.22
54275--54325
19
2.6
19
77
22
52
72
1
7
17
1.18
56085--56123
2
19.5
2
91
0
51
41
0
5
53
1.23
56428--56459
2
16.0
2
100
0
64
50
0
0
50
1.00
57745--57792
2
24.0
2
100
0
96
50
0
0
50
1.00
58746--58787
17
2.4
18
84
11
61
14
7
16
61
1.53
60142--60211
22
3.2
22
71
20
58
58
1
4
35
1.26
71255--71409
80
1.9
82
89
5
244
31
14
13
40
1.85
83674--83707
5
6.6
5
96
3
59
2
17
0
79
0.86
87341--87379
2
19.5
2
100
0
78
48
0
0
51
1.00
95990--96086
36
2.7
35
87
3
131
41
20
22
15
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104252--104276
1
25.0
1
100
0
50
0
0
0
100
0.00
104984--105047
29
2.2
30
85
2
85
23
14
12
50
1.76
110049--110084
9
3.9
9
85
7
54
41
27
0
30
1.56
110050--110086
19
1.9
19
100
0
74
43
29
0
27
1.55
114407--114432
2
13.0
2
100
0
52
0
50
0
50
1.00
123145--123184
20
2.0
20
100
0
80
35
25
20
20
1.96
123391--123429
19
2.1
19
100
0
78
30
30
0
38
1.58
125078--125115
19
2.0
19
89
0
58
47
10
5
36
1.61
128073--128100
3
9.3
3
100
0
56
32
0
0
67
0.91
130054--130096
20
2.1
21
91
4
70
53
9
13
23
1.69
130144--130220
22
3.6
21
78
1
73
38
10
11
38
1.76

Tables:   1

The End!