Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015350.1 Corchorus olitorius cultivar O-4 contig15383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1896
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33


Found at i:1856 original size:2 final size:2

Alignment explanation


    Indices: 1849--1883  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       1839 GCTAAAACTA

                                                                
       1849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1884 CACACACTAC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.