Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015353.1 Corchorus olitorius cultivar O-4 contig15386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4749
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:1113 original size:15 final size:15

Alignment explanation


    Indices: 1093--1123  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1083 TGAGTTTGGC

                           
       1093 AGAGCTGATTTGAGG
          1 AGAGCTGATTTGAGG

                           
       1108 AGAGCTGATTTGAGG
          1 AGAGCTGATTTGAGG

             
       1123 A
          1 A

       1124 AAATTGAGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.29, C:0.06, G:0.39, T:0.26


Consensus pattern (15 bp):   
AGAGCTGATTTGAGG
Done.