Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015354.1 Corchorus olitorius cultivar O-4 contig15387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53254

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1824--1881
30
1.9
31
85
3
82
27
20
5
46
1.72
5591--5631
21
2.0
21
95
0
73
41
12
14
31
1.83
10237--10273
14
2.4
16
86
13
60
62
5
18
13
1.50
10237--10273
15
2.5
15
91
8
58
62
5
18
13
1.50
10300--10328
14
2.0
15
93
6
51
68
6
10
13
1.37
12395--12479
45
1.9
43
97
0
143
38
20
7
34
1.79
25997--26028
16
2.0
16
100
0
64
25
37
25
12
1.91
31681--31726
23
2.0
23
86
0
65
43
36
8
10
1.71
32354--32387
16
2.1
16
94
0
59
29
38
20
11
1.88
34845--34881
2
18.5
2
100
0
74
51
0
0
48
1.00
40497--40527
14
2.1
15
94
5
55
45
0
3
51
1.17
40505--40550
19
2.3
20
77
7
58
39
0
4
56
1.19
40787--40833
11
4.1
11
79
15
51
25
2
2
70
1.10
40784--40833
25
2.0
25
84
0
64
30
2
2
66
1.14
40791--40837
13
3.8
12
84
13
60
25
2
2
70
1.10
43947--44441
35
13.8
35
84
8
541
39
10
16
33
1.83
44083--44138
17
3.2
17
71
14
60
41
10
12
35
1.78
44098--44187
45
2.0
45
91
6
148
38
8
18
33
1.82
44063--44222
80
2.0
79
92
1
266
39
8
18
33
1.81
44142--44442
36
8.6
36
88
4
391
40
10
16
32
1.83
45115--45211
34
2.9
34
87
1
142
36
12
12
39
1.81
45102--45211
34
3.3
34
82
3
134
36
15
10
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45198--45243
21
2.1
22
88
4
67
26
26
10
36
1.89
46979--47014
19
1.9
18
88
5
54
30
22
5
41
1.76
53146--53196
21
2.4
21
90
0
75
29
15
29
25
1.96

Tables:   1

The End!