Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015358.1 Corchorus olitorius cultivar O-4 contig15391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43506

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3318--3351
10
3.5
10
96
4
61
35
38
0
26
1.57
4126--4165
15
2.6
16
88
4
55
15
10
12
62
1.54
4417--4585
41
4.1
41
83
6
218
30
16
13
39
1.87
4419--4585
80
2.1
82
86
4
232
31
16
13
38
1.88
8166--8200
15
2.4
15
95
4
63
0
34
2
62
1.10
17117--17208
48
1.9
48
91
4
150
33
18
22
25
1.97
17233--17342
51
2.2
51
88
0
157
35
30
14
20
1.92
22535--23169
318
2.0
317
97
0
1198
22
15
18
43
1.87
23892--23957
31
2.2
31
86
2
89
40
30
10
18
1.84
23904--23969
30
2.2
31
83
8
82
43
30
10
15
1.80
30981--31031
15
3.4
15
86
0
66
47
17
1
33
1.59
31991--32021
11
2.8
11
95
0
53
32
9
48
9
1.69
32216--32340
65
1.9
65
93
0
214
22
30
25
21
1.99
32542--32667
21
6.0
21
95
1
218
24
26
19
29
1.98
34460--34597
33
4.2
32
80
5
107
44
21
6
28
1.77
36851--36980
65
2.0
65
90
0
206
21
29
25
23
1.99
37174--37295
21
5.8
21
93
0
208
26
26
18
29
1.98
40097--40149
22
2.4
22
78
12
56
66
9
5
18
1.41

Tables:   1

The End!