genome.fa.s15361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015361.1 Corchorus olitorius cultivar O-4 contig15394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87666

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413--518	53	2.0	53	100	0	212	24	32	16	26	1.97
607--644	18	2.1	18	95	0	67	28	23	5	42	1.76
629--677	22	2.2	22	100	0	98	14	24	8	53	1.68
760--982	72	3.0	73	92	5	358	30	23	18	27	1.98
832--982	80	1.9	80	97	0	284	30	23	19	27	1.98
6237--6276	18	2.2	19	86	4	55	85	5	2	7	0.83
6240--6276	19	1.9	19	88	0	56	83	5	2	8	0.88
8366--8390	13	1.9	13	100	0	50	76	0	24	0	0.80
14062--14131	26	2.9	23	72	25	72	47	11	12	28	1.77
14600--14629	2	15.0	2	100	0	60	50	0	0	50	1.00
15123--15164	6	7.2	6	86	2	50	54	11	0	33	1.37
22174--22208	14	2.6	14	90	4	54	20	0	31	48	1.50
23028--23163	50	2.7	50	89	0	200	31	25	27	14	1.95
23309--23444	32	4.2	32	86	2	175	22	16	23	37	1.93
23313--23449	64	2.1	64	87	0	193	22	16	21	39	1.92
23809--23849	6	6.8	6	97	0	73	17	51	12	19	1.76
25566--25939	160	2.3	161	84	5	466	31	18	18	32	1.95
26511--26730	96	2.3	96	83	0	296	36	20	25	17	1.94
26683--26752	22	3.2	22	79	0	77	38	17	21	22	1.93
30252--30517	53	5.1	53	73	8	265	46	15	7	30	1.73
30206--30517	156	2.0	156	96	0	579	45	13	7	33	1.71
30647--30722	39	2.0	39	82	7	93	39	6	5	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30780--30840	32	2.0	32	83	6	81	19	22	27	29	1.98
37937--37991	25	2.2	26	86	3	76	63	10	14	10	1.52
42134--42170	16	2.2	18	90	9	60	43	2	5	48	1.40
43179--43219	20	2.0	20	85	4	55	41	19	7	31	1.79
45418--45472	2	27.5	2	100	0	110	50	49	0	0	1.00
48055--48103	16	3.3	15	75	21	50	32	6	2	59	1.34
52599--52639	19	2.2	18	86	4	55	29	19	4	46	1.71
53840--54000	59	2.7	60	81	6	177	33	18	19	27	1.96
54040--54143	31	3.4	30	78	5	120	26	21	15	36	1.93
54070--54171	29	3.4	29	75	12	109	32	20	12	34	1.90
54039--54180	60	2.4	60	90	3	223	29	21	13	35	1.91
54043--54203	60	2.7	60	86	5	204	28	22	13	36	1.91
54942--54975	2	17.0	2	93	0	59	52	47	0	0	1.00
57344--57391	3	15.7	3	91	4	78	0	37	0	62	0.95
69794--69820	5	5.4	5	100	0	54	0	0	22	77	0.76
70493--70547	25	2.2	25	90	0	83	56	1	0	41	1.10
72229--72300	16	4.6	16	79	8	85	5	15	41	37	1.70
72290--72343	6	9.3	6	73	15	51	3	18	46	31	1.67
72291--72343	11	4.6	11	78	4	52	3	18	47	30	1.67
72293--72342	17	2.9	17	80	16	59	4	18	50	28	1.65
72770--72841	31	2.3	30	76	19	76	59	9	4	26	1.47
73126--73167	21	2.0	22	81	13	52	40	4	7	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74873--74925	22	2.4	22	90	0	79	5	20	45	28	1.74
79956--80183	45	5.1	45	78	7	223	41	13	29	15	1.85
79956--80182	87	2.6	89	78	4	244	41	13	29	15	1.85
80149--80273	45	2.8	45	83	2	171	35	12	34	18	1.88

Tables:   1

The End!