Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015362.1 Corchorus olitorius cultivar O-4 contig15395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8174
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32


Found at i:1157 original size:8 final size:8

Alignment explanation


    Indices: 1144--1176  Score: 50
    Period size: 8  Copynumber: 4.2  Consensus size: 8

       1134 AAGCAAATAA

                    
       1144 AATATATC
          1 AATATATC

                    
       1152 AATATATC
          1 AATATATC

               *    
       1160 AATTTA-C
          1 AATATATC

                    
       1167 AATATATC
          1 AATATATC

              
       1175 AA
          1 AA

       1177 ACAACTAATA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
   7    6  0.27
   8   16  0.73

ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36


Consensus pattern (8 bp):   
AATATATC
Done.