Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015369.1 Corchorus olitorius cultivar O-4 contig15402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90083

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
697--743
22
2.2
20
88
7
67
63
10
6
19
1.47
11881--11921
21
2.0
21
85
9
57
56
9
21
12
1.65
12666--12690
2
12.5
2
100
0
50
0
0
52
48
1.00
27620--27649
2
15.0
2
100
0
60
0
0
50
50
1.00
34791--34831
19
2.2
19
100
0
82
39
12
19
29
1.88
36253--36346
22
4.3
22
80
10
104
37
12
10
39
1.78
36253--36346
43
2.2
44
84
5
120
37
12
10
39
1.78
36334--36435
45
2.3
45
100
0
204
39
13
7
39
1.74
36340--36411
22
3.2
22
69
11
74
38
15
6
38
1.74
36253--36468
22
9.9
21
69
12
55
36
15
8
39
1.78
36466--36526
31
1.9
31
83
9
79
27
13
21
37
1.90
37529--37559
7
4.4
7
95
0
53
83
12
0
3
0.75
38406--38461
23
2.5
22
75
21
53
69
3
1
25
1.14
40487--40520
17
2.1
17
89
10
54
0
20
0
79
0.73
40987--41023
16
2.3
16
85
0
56
86
5
2
5
0.78
45417--45609
22
8.9
22
71
17
104
34
16
9
40
1.80
45417--45510
43
2.2
44
84
5
120
37
12
10
39
1.78
45569--45619
22
2.3
22
75
0
57
23
17
9
49
1.77
45849--45941
45
2.1
45
91
0
150
27
16
12
43
1.84
49862--49918
30
1.9
30
85
7
80
43
7
19
29
1.77
50483--50520
18
2.1
19
90
5
60
10
18
7
63
1.50
50483--50520
19
2.1
18
85
14
51
10
18
7
63
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51455--51689
116
2.0
116
97
0
443
30
20
17
31
1.96
52540--52676
25
5.4
25
92
1
220
27
29
19
23
1.98
56911--56936
7
3.7
7
100
0
52
30
53
0
15
1.42
59520--59555
19
1.9
18
88
5
54
30
5
16
47
1.70
64764--64839
29
2.7
30
86
8
97
15
15
22
46
1.84
68541--68571
15
2.0
16
93
6
55
77
0
12
9
0.99
72936--72998
5
12.6
5
100
0
126
39
0
0
60
0.97
80902--80960
6
10.2
6
77
14
61
1
18
50
28
1.56
80885--80958
23
3.3
23
83
5
80
4
18
50
27
1.65
80904--80952
17
2.9
17
82
14
57
2
16
55
26
1.52
80925--80959
17
2.1
17
94
0
61
0
20
54
25
1.45
81085--81131
13
3.8
12
78
13
51
55
4
0
40
1.19
81375--81456
31
2.6
31
76
16
80
59
7
3
29
1.41
83255--83291
14
2.6
14
84
16
58
67
0
8
24
1.17
88396--88456
30
2.0
30
90
3
95
40
11
3
44
1.57
88783--88822
16
2.5
16
92
8
64
52
0
0
47
1.00
89692--89759
31
2.2
29
80
14
75
27
17
23
30
1.97

Tables:   1

The End!