Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015372.1 Corchorus olitorius cultivar O-4 contig15405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85753

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2995--3034
20
2.0
20
95
0
71
37
15
15
32
1.88
6946--6975
11
2.7
11
94
0
51
80
0
10
10
0.92
14232--14296
31
2.2
29
86
5
85
27
20
13
38
1.90
18946--19051
52
2.1
52
90
1
169
51
15
16
16
1.76
19182--19826
160
4.0
160
96
0
1139
33
27
23
15
1.95
20153--20180
13
2.2
13
100
0
56
53
21
0
25
1.46
21513--21591
21
3.6
21
71
23
65
51
1
2
44
1.23
21529--21589
19
2.9
20
76
13
61
50
1
3
44
1.28
21522--21582
31
2.1
31
84
9
83
50
1
3
44
1.28
25268--25302
15
2.3
15
90
9
54
37
17
22
22
1.94
33593--33821
123
1.9
123
91
0
377
31
19
12
36
1.89
55364--55402
18
2.2
18
95
0
69
35
10
2
51
1.50
55850--55919
32
2.2
31
85
7
88
48
12
7
31
1.68
60072--60136
18
3.6
18
80
0
76
47
3
44
4
1.39
60063--60106
15
2.9
15
82
0
52
50
2
40
6
1.42
79063--79130
30
2.3
30
97
0
127
36
10
17
35
1.84
81253--82058
334
2.4
332
80
7
868
34
15
14
34
1.88
82184--84146
330
5.9
331
80
6
1941
35
16
14
32
1.90
82150--84146
660
3.0
654
82
6
2275
35
16
14
32
1.90
83628--84709
563
1.9
559
82
5
1360
35
16
16
31
1.91
84170--85368
331
3.6
330
81
4
1290
35
16
15
32
1.90
83292--85032
894
1.9
889
82
5
2132
35
16
16
31
1.91

Tables:   1

The End!