Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015376.1 Corchorus olitorius cultivar O-4 contig15409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95394
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Found at i:6488 original size:7 final size:7
Alignment explanation
Indices: 6476--6517 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
6466 TTGTTGTTGG
*
6476 CTCAAGT
1 CTCAACT
*
6483 CTCAAGT
1 CTCAACT
6490 CTCAACT
1 CTCAACT
6497 CTCAACT
1 CTCAACT
6504 CTCAACT
1 CTCAACT
6511 CTCAACT
1 CTCAACT
6518 GCACTGTTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.29, C:0.38, G:0.05, T:0.29
Consensus pattern (7 bp):
CTCAACT
Found at i:13546 original size:111 final size:110
Alignment explanation
Indices: 13412--13633 Score: 426
Period size: 111 Copynumber: 2.0 Consensus size: 110
13402 TTAACATTAG
*
13412 ATGTCAGAGTTGTAGTTTTAATTGCTTACTAAATACTAATTTTGTTGAGTTTTTGGGGTATTTGG
1 ATGTCAGAGTTGTAGTTTTAATTGCTTACTAAATACTAATTTTGTTGAGTTTTGGGGGTATTTGG
13477 TGATTTTTTTTCTAATCCGAATAAGCTTGATGAATTCAAACAGAGC
66 TGA-TTTTTTTCTAATCCGAATAAGCTTGATGAATTCAAACAGAGC
13523 ATGTCAGAGTTGTAGTTTTAATTGCTTACTAAATACTAATTTTGTTGAGTTTTGGGGGTATTTGG
1 ATGTCAGAGTTGTAGTTTTAATTGCTTACTAAATACTAATTTTGTTGAGTTTTGGGGGTATTTGG
13588 TGATTTTTTTCTAATCCGAATAAGCTTGATGAATTCAAACAGAGC
66 TGATTTTTTTCTAATCCGAATAAGCTTGATGAATTCAAACAGAGC
13633 A
1 A
13634 CGTAGAAAAT
Statistics
Matches: 110, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
110 43 0.39
111 67 0.61
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.42
Consensus pattern (110 bp):
ATGTCAGAGTTGTAGTTTTAATTGCTTACTAAATACTAATTTTGTTGAGTTTTGGGGGTATTTGG
TGATTTTTTTCTAATCCGAATAAGCTTGATGAATTCAAACAGAGC
Found at i:22956 original size:41 final size:41
Alignment explanation
Indices: 22899--22982 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
22889 GGGCCCGGGT
22899 TCCTCTCCCAACAAGTGGTATCAGAGCCCGGTTAGACTCGA
1 TCCTCTCCCAACAAGTGGTATCAGAGCCCGGTTAGACTCGA
22940 TCCTCTCCCAACAAGTGGTATCAGAGCCCGGTTAGACTCGA
1 TCCTCTCCCAACAAGTGGTATCAGAGCCCGGTTAGACTCGA
22981 TC
1 TC
22983 GGTGTTGCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (41 bp):
TCCTCTCCCAACAAGTGGTATCAGAGCCCGGTTAGACTCGA
Found at i:24499 original size:2 final size:2
Alignment explanation
Indices: 24492--24534 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
24482 TACTATTTAG
*
24492 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24534 T
1 T
24535 TGCTGGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:27461 original size:15 final size:15
Alignment explanation
Indices: 27441--27470 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27431 CCCTTCATCA
27441 GCTTTATATGTTGTT
1 GCTTTATATGTTGTT
27456 GCTTTATATGTTGTT
1 GCTTTATATGTTGTT
27471 TGTTCATCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.20, T:0.60
Consensus pattern (15 bp):
GCTTTATATGTTGTT
Found at i:33318 original size:13 final size:13
Alignment explanation
Indices: 33300--33324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33290 AATTCCAAGT
33300 TTGGATAGGAATA
1 TTGGATAGGAATA
33313 TTGGATAGGAAT
1 TTGGATAGGAAT
33325 TGGCCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (13 bp):
TTGGATAGGAATA
Found at i:42044 original size:1 final size:1
Alignment explanation
Indices: 42038--42073 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
42028 GTTCTTTTAG
*
42038 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
42074 AAAATCCAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:42052 original size:12 final size:12
Alignment explanation
Indices: 42032--42071 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
42022 TGCTCAGTTC
*
42032 TTTTAGTTTTTT
1 TTTTTGTTTTTT
42044 TTTTTGTTTTTT
1 TTTTTGTTTTTT
42056 TTTTT-TTTTTT
1 TTTTTGTTTTTT
42067 TTTTT
1 TTTTT
42072 TTAAAATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.03, C:0.00, G:0.05, T:0.93
Consensus pattern (12 bp):
TTTTTGTTTTTT
Found at i:48302 original size:6 final size:6
Alignment explanation
Indices: 48291--48315 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
48281 TTATAAATAG
48291 TTATGA TTATGA TTATGA TTATGA T
1 TTATGA TTATGA TTATGA TTATGA T
48316 GTTTTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TTATGA
Found at i:48574 original size:16 final size:16
Alignment explanation
Indices: 48553--48584 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48543 GCTTGGAGCC
*
48553 AAACAAACAATCAAGG
1 AAACAAACAAACAAGG
48569 AAACAAACAAACAAGG
1 AAACAAACAAACAAGG
48585 GAAAAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.19, G:0.12, T:0.03
Consensus pattern (16 bp):
AAACAAACAAACAAGG
Found at i:50550 original size:2 final size:2
Alignment explanation
Indices: 50543--50569 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50533 TAATTAGTAC
50543 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
50570 CATCATTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50857 original size:14 final size:15
Alignment explanation
Indices: 50838--50869 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
50828 TTAAAATTTT
50838 AAAAAAGAAAGA-AA
1 AAAAAAGAAAGAGAA
50852 AAAAAAGAAAGAGAA
1 AAAAAAGAAAGAGAA
50867 AAA
1 AAA
50870 TTTAGAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAGAGAA
Found at i:56611 original size:7 final size:7
Alignment explanation
Indices: 56599--56627 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
56589 AGCTAAACGC
56599 TTCCAAA
1 TTCCAAA
56606 TTCCAAA
1 TTCCAAA
56613 TTCCAAA
1 TTCCAAA
56620 TTCCAAA
1 TTCCAAA
56627 T
1 T
56628 CCTCCTGCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.31
Consensus pattern (7 bp):
TTCCAAA
Found at i:65291 original size:13 final size:13
Alignment explanation
Indices: 65275--65311 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
65265 TTTCTTTTTC
65275 TCTTTTTGTTCTT
1 TCTTTTTGTTCTT
65288 TC-TTTT-TTCTT
1 TCTTTTTGTTCTT
*
65299 TTTTTTTGTTCTT
1 TCTTTTTGTTCTT
65312 CAATGGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 6 0.29
12 8 0.38
13 7 0.33
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (13 bp):
TCTTTTTGTTCTT
Found at i:77676 original size:21 final size:20
Alignment explanation
Indices: 77651--77690 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
77641 GATGCAGGTT
* *
77651 TTTATTTTTGTTATTTATTTA
1 TTTATTATTG-TAGTTATTTA
77672 TTTATTATTGTAGTTATTT
1 TTTATTATTGTAGTTATTT
77691 CAAAAAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.72
Consensus pattern (20 bp):
TTTATTATTGTAGTTATTTA
Found at i:83343 original size:16 final size:16
Alignment explanation
Indices: 83324--83365 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
83314 TTGTAGTGGT
83324 GATGCAGCATAGTAGC
1 GATGCAGCATAGTAGC
83340 GATGCAGCATAGTAGC
1 GATGCAGCATAGTAGC
83356 GATGCAGCAT
1 GATGCAGCAT
83366 CTTCAATTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (16 bp):
GATGCAGCATAGTAGC
Found at i:94503 original size:330 final size:331
Alignment explanation
Indices: 93806--95377 Score: 1986
Period size: 331 Copynumber: 4.7 Consensus size: 331
93796 TAAAAGAGGG
** * *
93806 TAATTCAATTCCAAAAAGATATAAGGGCTTTTCACTCTTCTAACATCGATTTTCCTATTTTTT-T
1 TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCAATTTTTTCT
* * * * *
93870 GAATGAATTGCTAATGAAAATGAAAACGGTCTCTGATGCTCGTAAAAACAAATCCTTAAATCCAA
66 GAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCCAA
* * * *
93935 TGTGACTGAGATTCGGTTACATGGATAAAGATATTTCAAGGAGTCTCGGCAACAAAAATCATGCA
131 TGTGACTGAGATTTGGTTACATGAATATAGATATTTCAAGGAGTCTCGGCACCAAAAATCATGCA
* * *
94000 AAACTGAGCCGGGACCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCG
196 AAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCC-AAAACCGTGATGGTTAGTACACGATTTCG
* * * *
94065 GCTAAAACTTTGCAAAAAATGACCCGAAATATTTTTCCTCAAATTTGGGCCGAAATACTCATAAA
260 GCTAAAATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTTGACCGAAATACTCATAAA
94130 AAATATA
325 AAATATA
* * * *
94137 TATTTCCACGCCAAAAAGATATAAGTGTTTTTCACTCTTCTAACATCGATTTTCCAATTTTTTAT
1 TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCAATTTTTTCT
*
94202 GAATTAATTTCTAATGAAATTGAAAACAGTTTCGGATGCTCGTAAAAAC-AATCCTTAAATCCAA
66 GAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCCAA
* * * * * *
94266 TATGACTGGGATTTAGTTATATGAATATATATA-TTCTTAGGAGTCTCGGCACCAAAAATCATGC
131 TGTGACTGAGATTTGGTTACATGAATATAGATATTTC-AAGGAGTCTCGGCACCAAAAATCATGC
* * *
94330 AAAACTGAGCC-GGGCCCCCAGTATGCGTTTTTAGCCAAAACCGTGATGGTTAGTACACGATTTC
195 AAAACTGAGCCGGGGCCCCGA-AACGCGTTTTTAGCCAAAACCGTGATGGTTAGTACACGATTTC
* * *
94394 AGCTAATATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTT-ATCCGAAATACTCATG
259 GGCTAAAATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTTGA-CCGAAATACTCATA
94458 AAAAATATA
323 AAAAATATA
* * **
94467 TAATTCAACGCAAAAAAGATATAAGGGTTTTTCACTCGTCTAACATCGATTTTCGTA-TTTTTCT
1 TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCAATTTTTTCT
* * ** *
94531 GAATTAATTTCTAATGAAATTGGAAACTGTTTCGGATAATCGTAAAAACATATCCTTAAATCCAA
66 GAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCCAA
* *
94596 TTTGACTGAGATTTGGTTACATGAATATAGATATTTCAATTTTCAAGGAGTCTCGGCATCAAAAA
131 TGTGACTGAGATTTGGTTACATGAATATAG--A--T--A-TTTCAAGGAGTCTCGGCACCAAAAA
* * * *
94661 TCATGCAAAACTTAGTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAAC----T-GTTA-T---TG
189 TCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAACCGTGATGGTTAGTACACG
* * * *
94717 AGTTCGGCTAAAATTTTGCAAAAATTGAACCCGAAATATTTTTCCTTAATTTTTGACCAAAATAC
254 ATTTCGGCTAAAATTTTGCAAAAAATG-ACCCGAAATATTTTTCCTCAATTTTTGACCGAAATAC
94782 TCATAAAAAATATA
318 TCATAAAAAATATA
*
94796 TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCTATTTTTTTC
1 TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCC-AATTTTTTC
* * * * *
94861 TGAATTAATTTCTAATGAAAATGAAGATGGTTTCTGATGCTCGTAAAAACAAATCTTTAAATCCA
65 TGAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCCA
* * * * *
94926 ATGTGGCTGAGATTTGGTTATATGAATATAGATATTTCAAGGAGTATCGGCACCAAAAATCAAGG
130 ATGTGACTGAGATTTGGTTACATGAATATAGATATTTCAAGGAGTCTCGGCACCAAAAATCATGC
* *
94991 AAAACTGAGCCGGGGCCCCGAAACCCGTTTTTAGCCAAGAGCCGGGGCCCGGAACCGTAATGGTT
195 AAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCC-A-A------------AACCGTGATGGTT
* * * * *
95056 AGTACACGATTTTGGCTAAAATTTTGCAAAAATTAACTCGAAATATTTTTCCTCAATTTTTGACT
246 AGTACACGATTTCGGCTAAAATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTTGACC
*
95121 GAAATACTCATAAAAAATATG
311 GAAATACTCATAAAAAATATA
* *
95142 TAATTCATCGCCAAAAAGATATAAGGGCTTTTTCACTCTTCTAACATCGATTTTCCTATTTTTTT
1 TAATTCAACGCCAAAAAGATATAAGGG-TTTTTCACTCTTCTAACATCGATTTTCC-AATTTTTT
* *
95207 CTGAATTAATTGCTAATGAAATTGAAAACGGTTTCCGATGCTCGTAAAAACAAATCCTTAAATCC
64 CTGAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCC
* ** * * *
95272 AATGTGGCTGAGATTCAGTTACATGAATAAAGATATTTCAAGGAGTCTTGGCACAAAAAATCATG
129 AATGTGACTGAGATTTGGTTACATGAATATAGATATTTCAAGGAGTCTCGGCACCAAAAATCATG
** *
95337 CAAAACTGAGCCGAAGCCCCGGAACGCGTTTTTAGCCAAAA
194 CAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAA
95378 ATTGTGATGA
Statistics
Matches: 1074, Mismatches: 125, Indels: 82
0.84 0.10 0.06
Matches are distributed among these distances:
324 60 0.06
325 2 0.00
326 1 0.00
327 1 0.00
328 24 0.02
329 150 0.14
330 191 0.18
331 235 0.22
332 49 0.05
333 3 0.00
334 1 0.00
336 1 0.00
337 52 0.05
338 14 0.01
342 1 0.00
343 4 0.00
344 1 0.00
345 1 0.00
346 73 0.07
347 210 0.20
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (331 bp):
TAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCAATTTTTTCT
GAATTAATTTCTAATGAAATTGAAAACGGTTTCGGATGCTCGTAAAAACAAATCCTTAAATCCAA
TGTGACTGAGATTTGGTTACATGAATATAGATATTTCAAGGAGTCTCGGCACCAAAAATCATGCA
AAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAACCGTGATGGTTAGTACACGATTTCGG
CTAAAATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTTGACCGAAATACTCATAAAA
AATATA
Found at i:95273 original size:347 final size:347
Alignment explanation
Indices: 94722--95375 Score: 1067
Period size: 347 Copynumber: 1.9 Consensus size: 347
94712 TATTGAGTTC
*
94722 GGCTAAAATTTTGCAAAAATTGAACCCGAAATATTTTTCCTTAATTTTTGACCAAAATACTCATA
1 GGCTAAAATTTTGCAAAAATTGAACCCGAAATATTTTTCCTCAATTTTTGACCAAAATACTCATA
94787 AAAAATATATAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCT
66 AAAAATATATAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCT
* * * * *
94852 ATTTTTTTCTGAATTAATTTCTAATGAAAATGAAGATGGTTTCTGATGCTCGTAAAAACAAATCT
131 ATTTTTTTCTGAATTAATTGCTAATGAAAATGAAAACGGTTTCCGATGCTCGTAAAAACAAATCC
** * * *
94917 TTAAATCCAATGTGGCTGAGATTTGGTTATATGAATATAGATATTTCAAGGAGTATCGGCACCAA
196 TTAAATCCAATGTGGCTGAGATTCAGTTACATGAATAAAGATATTTCAAGGAGTATCGGCACAAA
* **
94982 AAATCAAGGAAAACTGAGCCGGGGCCCCGAAACCCGTTTTTAGCCAAGAGCCGGGGCCCGGAACC
261 AAATCAAGCAAAACTGAGCCGAAGCCCCGAAACCCGTTTTTAGCCAAGAGCCGGGGCCCGGAACC
95047 GTAATGGTTAGTACACGATTTT
326 GTAATGGTTAGTACACGATTTT
* **
95069 GGCTAAAATTTTGCAAAAATT-AACTCGAAATATTTTTCCTCAATTTTTGACTGAAATACTCATA
1 GGCTAAAATTTTGCAAAAATTGAACCCGAAATATTTTTCCTCAATTTTTGACCAAAATACTCATA
* *
95133 AAAAATATGTAATTCATCGCCAAAAAGATATAAGGGCTTTTTCACTCTTCTAACATCGATTTTCC
66 AAAAATATATAATTCAACGCCAAAAAGATATAAGGG-TTTTTCACTCTTCTAACATCGATTTTCC
*
95198 TATTTTTTTCTGAATTAATTGCTAATGAAATTGAAAACGGTTTCCGATGCTCGTAAAAACAAATC
130 TATTTTTTTCTGAATTAATTGCTAATGAAAATGAAAACGGTTTCCGATGCTCGTAAAAACAAATC
* *
95263 CTTAAATCCAATGTGGCTGAGATTCAGTTACATGAATAAAGATATTTCAAGGAGTCTTGGCACAA
195 CTTAAATCCAATGTGGCTGAGATTCAGTTACATGAATAAAGATATTTCAAGGAGTATCGGCACAA
* * *
95328 AAAATCATGCAAAACTGAGCCGAAGCCCCGGAACGCGTTTTTAGCCAA
260 AAAATCAAGCAAAACTGAGCCGAAGCCCCGAAACCCGTTTTTAGCCAA
95376 AAATTGTGAT
Statistics
Matches: 281, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
346 73 0.26
347 208 0.74
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (347 bp):
GGCTAAAATTTTGCAAAAATTGAACCCGAAATATTTTTCCTCAATTTTTGACCAAAATACTCATA
AAAAATATATAATTCAACGCCAAAAAGATATAAGGGTTTTTCACTCTTCTAACATCGATTTTCCT
ATTTTTTTCTGAATTAATTGCTAATGAAAATGAAAACGGTTTCCGATGCTCGTAAAAACAAATCC
TTAAATCCAATGTGGCTGAGATTCAGTTACATGAATAAAGATATTTCAAGGAGTATCGGCACAAA
AAATCAAGCAAAACTGAGCCGAAGCCCCGAAACCCGTTTTTAGCCAAGAGCCGGGGCCCGGAACC
GTAATGGTTAGTACACGATTTT
Done.