Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015378.1 Corchorus olitorius cultivar O-4 contig15411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65026

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
754--811
28
2.1
28
96
0
107
37
22
20
18
1.94
1896--1925
15
2.0
15
93
0
51
50
16
6
26
1.70
2390--2766
31
12.7
31
89
6
504
46
16
12
23
1.82
2390--2766
114
3.2
115
89
5
533
46
16
12
23
1.82
2400--2720
145
2.2
141
90
6
482
47
17
12
22
1.81
3366--3998
31
21.0
31
84
12
860
47
17
12
22
1.81
3366--3983
58
10.3
58
88
9
849
47
17
12
22
1.81
3366--3998
89
7.0
87
90
8
838
47
17
12
22
1.81
3605--3692
43
2.0
43
95
4
160
48
18
12
20
1.80
21480--21524
2
22.5
2
100
0
90
51
0
48
0
1.00
26731--26788
22
2.6
22
83
2
71
46
8
8
36
1.65
26731--26812
23
3.6
22
79
9
76
43
7
8
40
1.63
26750--26811
23
2.7
23
85
7
83
43
4
8
43
1.55
45698--45730
3
11.0
3
93
0
57
3
30
0
66
1.06
49920--49972
26
2.0
26
96
0
97
33
30
3
32
1.76
51646--51715
32
2.2
32
94
0
122
51
12
5
30
1.63
51728--51820
47
2.0
47
95
0
168
35
24
9
30
1.88
64760--64796
2
18.5
2
100
0
74
48
0
0
51
1.00
64930--64980
25
2.0
25
100
0
102
35
7
15
41
1.76

Tables:   1

The End!