Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015379.1 Corchorus olitorius cultivar O-4 contig15412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140476
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--35 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36 GGAGTTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:830 original size:15 final size:15
Alignment explanation
Indices: 810--844 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
800 GAAAGCACCG
*
810 TCCATGGCAGCCCCA
1 TCCATGACAGCCCCA
825 TCCATGACAGCCCCA
1 TCCATGACAGCCCCA
840 -CCATG
1 TCCATG
845 TCTCTCGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.23, C:0.46, G:0.17, T:0.14
Consensus pattern (15 bp):
TCCATGACAGCCCCA
Found at i:3021 original size:20 final size:19
Alignment explanation
Indices: 2995--3046 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
2985 CTAAGATTTT
2995 TCATTACACCAAAAAATGA
1 TCATTACACCAAAAAATGA
3014 TACATTACACTC-AAAAATGA
1 T-CATTACAC-CAAAAAATGA
3034 TCATTACACCAAA
1 TCATTACACCAAA
3047 TATTGAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.03
19 11 0.37
20 17 0.57
21 1 0.03
ACGTcount: A:0.50, C:0.23, G:0.04, T:0.23
Consensus pattern (19 bp):
TCATTACACCAAAAAATGA
Found at i:5633 original size:58 final size:57
Alignment explanation
Indices: 5525--5633 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
5515 TCAATCTCTC
* * *
5525 TTTTTTTTGTGCCAAATTTTTTTCGATCTCTTAAAATAACTTGTCTCTTTTTATTTG
1 TTTTTTTTGTGCCAAATTTTCTTCAATCTCTTAAAATAACTTATCTCTTTTTATTTG
* * *
5582 TTTTTTTTTTAGCTAAATTTTCTTCAATCTCTTAAAATACCTTAATC-CTTTT
1 TTTTTTTTGT-GCCAAATTTTCTTCAATCTCTTAAAATAACTT-ATCTCTTTT
5634 ACAAAAACCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 9 0.20
58 33 0.75
59 2 0.05
ACGTcount: A:0.22, C:0.16, G:0.06, T:0.57
Consensus pattern (57 bp):
TTTTTTTTGTGCCAAATTTTCTTCAATCTCTTAAAATAACTTATCTCTTTTTATTTG
Found at i:8619 original size:177 final size:177
Alignment explanation
Indices: 8323--8769 Score: 831
Period size: 177 Copynumber: 2.5 Consensus size: 177
8313 TTCATAAGGG
8323 GTAATTAACAGATAGAGGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
1 GTAATTAACAGATAGAGGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
* *
8388 GATTTACTAGTACATTGAATCCTACAGGAAATTTTACTAGGGTTCGTGTAAAATTTCAAGGATTT
66 GATTTACTAGTACATTGAATCCTACAGGAAATTTTACTAAGGTTCATGTAAAATTTCAAGGATTT
8453 TACTACAGGAAATGATTACCCCATTTCAAGGATTTACTAGGGTTCGT
131 TACTACAGGAAATGATTACCCCATTTCAAGGATTTACTAGGGTTCGT
* * *
8500 GTAATTAACGGATAGGGGGAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
1 GTAATTAACAGATAGAGGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
8565 GATTTACTAGTACATTGAATCCTACAGGAAATTTTACTAAGGTTCATGTAAAATTTCAAGGATTT
66 GATTTACTAGTACATTGAATCCTACAGGAAATTTTACTAAGGTTCATGTAAAATTTCAAGGATTT
*
8630 TACTACAGGAAATGATTACCCCCTTTCAAGGATTTACTAGGGTTCGT
131 TACTACAGGAAATGATTACCCCATTTCAAGGATTTACTAGGGTTCGT
*
8677 GTAATTAACAGATAGAAGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
1 GTAATTAACAGATAGAGGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
8742 GATTTACTAGTACATTGAATCCTACAGG
66 GATTTACTAGTACATTGAATCCTACAGG
8770 GAAAAAGGAA
Statistics
Matches: 260, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
177 260 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (177 bp):
GTAATTAACAGATAGAGGAAATTTTAATCGGGTAGGGTTCGGATAGAGAGTTTTAGAAATTCAAG
GATTTACTAGTACATTGAATCCTACAGGAAATTTTACTAAGGTTCATGTAAAATTTCAAGGATTT
TACTACAGGAAATGATTACCCCATTTCAAGGATTTACTAGGGTTCGT
Found at i:9221 original size:12 final size:13
Alignment explanation
Indices: 9195--9232 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
9185 TTAGGGTTGG
*
9195 TTATATATATAAA
1 TTATAAATATAAA
9208 TTATAAAT-TAAA
1 TTATAAATATAAA
*
9220 TTCTAAATATAAA
1 TTATAAATATAAA
9233 ATCTGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
TTATAAATATAAA
Found at i:9340 original size:22 final size:21
Alignment explanation
Indices: 9315--9395 Score: 90
Period size: 22 Copynumber: 3.8 Consensus size: 21
9305 TGAATATTTT
9315 TATTAAATTTTGATAACTATCC
1 TATTAAATTTTGATAACTAT-C
* * *
9337 TATTAAATTTTTATAACCATGT
1 TATTAAATTTTGATAACTAT-C
* *
9359 TATGAAATTTTGATAATTATC
1 TATTAAATTTTGATAACTATC
*
9380 TATTAAATTGTGATAA
1 TATTAAATTTTGATAA
9396 ACTCCATATG
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 14 0.29
22 34 0.71
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47
Consensus pattern (21 bp):
TATTAAATTTTGATAACTATC
Found at i:9406 original size:43 final size:44
Alignment explanation
Indices: 9319--9418 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 44
9309 TATTTTTATT
* * * **
9319 AAATTTTGATAACTATCCTATTAAATTTTTATAACCATGTTATG
1 AAATTTTGATAACTATCCTATTAAATTGTGATAAACATCATATG
*
9363 AAATTTTGATAATTAT-CTATTAAATTGTGATAAAC-TCCATATG
1 AAATTTTGATAACTATCCTATTAAATTGTGATAAACAT-CATATG
*
9406 AAACTTTGATAAC
1 AAATTTTGATAAC
9419 CTAACTATGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.02
43 31 0.66
44 15 0.32
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (44 bp):
AAATTTTGATAACTATCCTATTAAATTGTGATAAACATCATATG
Found at i:9469 original size:21 final size:21
Alignment explanation
Indices: 9397--9501 Score: 88
Period size: 21 Copynumber: 4.9 Consensus size: 21
9387 TTGTGATAAA
* *
9397 CTCCATATGAAACTTTGATAAC
1 CTCCTTATGAAATTTTG-TAAC
*
9419 CTAAC-TATGAAATTTTAGTAAAC
1 CT-CCTTATGAAATTTT-GT-AAC
*
9442 CTTCTTATGAAATTTTGTAAC
1 CTCCTTATGAAATTTTGTAAC
*
9463 CTCCTTATG-AGTTTTGATAAC
1 CTCCTTATGAAATTTTG-TAAC
* *
9484 CTCCCTATGATATTTTGT
1 CTCCTTATGAAATTTTGT
9502 TAATCTCCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
20 6 0.09
21 24 0.35
22 21 0.30
23 18 0.26
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (21 bp):
CTCCTTATGAAATTTTGTAAC
Found at i:9509 original size:22 final size:20
Alignment explanation
Indices: 9423--9513 Score: 74
Period size: 21 Copynumber: 4.2 Consensus size: 20
9413 GATAACCTAA
*
9423 CTATGAAATTTTAGTAAACCTTC
1 CTATG-AATTTT-GT-AACCTCC
*
9446 TTATGAAATTTTGTAACCTCC
1 CTATG-AATTTTGTAACCTCC
* *
9467 TTATGAGTTTTGATAACCTCC
1 CTATGAATTTTG-TAACCTCC
*
9488 CTATGATATTTTGTTAATCTCC
1 CTATGA-ATTTTG-TAACCTCC
9510 CTAT
1 CTAT
9514 AACTTTTTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.10
21 24 0.41
22 18 0.31
23 11 0.19
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44
Consensus pattern (20 bp):
CTATGAATTTTGTAACCTCC
Found at i:9521 original size:22 final size:22
Alignment explanation
Indices: 9453--9526 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
9443 TTCTTATGAA
* *
9453 ATTTTG-TAACCTCCTTATGA-
1 ATTTTGATAACCTCCCTATAAT
* *
9473 GTTTTGATAACCTCCCTATGAT
1 ATTTTGATAACCTCCCTATAAT
* *
9495 ATTTTGTTAATCTCCCTATAACT
1 ATTTTGATAACCTCCCTATAA-T
*
9518 TTTTTGATA
1 ATTTTGATA
9527 CTATAGTATG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
20 5 0.12
21 13 0.30
22 17 0.40
23 8 0.19
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.47
Consensus pattern (22 bp):
ATTTTGATAACCTCCCTATAAT
Found at i:10391 original size:21 final size:22
Alignment explanation
Indices: 10333--10391 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
10323 ACTATATTTG
10333 AAAAAAAAAGGTACAATCGATTGA
1 AAAAAAAAAGGTACAATCG--TGA
*
10357 AAAAAAAAAAGTACAATCG-GA
1 AAAAAAAAAGGTACAATCGTGA
* *
10378 AAACATAAAGGTAC
1 AAAAAAAAAGGTAC
10392 GAGAGGGGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 13 0.42
24 18 0.58
ACGTcount: A:0.61, C:0.10, G:0.15, T:0.14
Consensus pattern (22 bp):
AAAAAAAAAGGTACAATCGTGA
Found at i:12146 original size:32 final size:32
Alignment explanation
Indices: 12107--12180 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
12097 GTGTTGTGTT
* *
12107 TTTTTGTGGTTTATACAACCGACTTTGTGGTG
1 TTTTTGTGGCTTATACAACCGACTTTGTGGTA
12139 TTTTTGTGGCTTATACAACCGACTTTGTGGTA
1 TTTTTGTGGCTTATACAACCGACTTTGTGGTA
12171 TTTTTGTGGC
1 TTTTTGTGGC
12181 ACATACTTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.15, C:0.14, G:0.24, T:0.47
Consensus pattern (32 bp):
TTTTTGTGGCTTATACAACCGACTTTGTGGTA
Found at i:31973 original size:13 final size:12
Alignment explanation
Indices: 31957--31999 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
31947 AAAAATTTTT
31957 AAAAAAAAGAAA
1 AAAAAAAAGAAA
*
31969 GAAAAAAAGAAA
1 AAAAAAAAGAAA
31981 AAAGAAAAAGAAA
1 AAA-AAAAAGAAA
31994 AAAAAA
1 AAAAAA
32000 GTCTAAACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:31983 original size:21 final size:21
Alignment explanation
Indices: 31957--31997 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
31947 AAAAATTTTT
31957 AAAAAA-AAGAAAGAAAAAAAG
1 AAAAAAGAA-AAAGAAAAAAAG
31978 AAAAAAGAAAAAGAAAAAAA
1 AAAAAAGAAAAAGAAAAAAA
31998 AAGTCTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAAGAAAAAAAG
Found at i:38622 original size:105 final size:105
Alignment explanation
Indices: 38507--39045 Score: 1035
Period size: 105 Copynumber: 5.1 Consensus size: 105
38497 GCACTATGAC
*
38507 TATGGACCTAATTCAATTTTAACATTAGAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
38572 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
38612 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
38677 AAAACAAAAAAA-ATATAAAAAGAATGAAAATTATTAAAA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
38716 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
38781 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
*
38821 TATGGACCTAATTCAATTTTAACATTAGAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
*
38886 AAAACAAAAAAGTATATAAAAAGAATGAAAATTATTAAAA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
38926 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
*
38991 AAAACAAAAAAAAATATAAAAAGAATGAAAATTATTAAAA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
39031 TATGGACCTAATTCA
1 TATGGACCTAATTCA
39046 TAAGCCCAAG
Statistics
Matches: 427, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
104 104 0.24
105 323 0.76
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.26
Consensus pattern (105 bp):
TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAA
Found at i:38867 original size:209 final size:210
Alignment explanation
Indices: 38507--39045 Score: 1035
Period size: 209 Copynumber: 2.6 Consensus size: 210
38497 GCACTATGAC
*
38507 TATGGACCTAATTCAATTTTAACATTAGAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
38572 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCAATTTTAACAT
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCAATTTTAACAT
38637 TACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACAAAAACAAAAAA-AATATAAAAAGAA
131 TACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACAAAAACAAAAAAGAATATAAAAAGAA
38701 TGAAAATTATTAAAA
196 TGAAAATTATTAAAA
38716 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
38781 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCAATTTTAACAT
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCAATTTTAACAT
* *
38846 TAGAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACAAAAACAAAAAAGTATATAAAAAGAA
131 TACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACAAAAACAAAAAAGAATATAAAAAGAA
38911 TGAAAATTATTAAAA
196 TGAAAATTATTAAAA
38926 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
1 TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
*
38991 AAAACAAAAAAAAATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCA
66 AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCA
39046 TAAGCCCAAG
Statistics
Matches: 325, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
209 179 0.55
210 146 0.45
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.26
Consensus pattern (210 bp):
TATGGACCTAATTCAATTTTAACATTACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACA
AAAACAAAAAAATATATAAAAAGAATGAAAATTATTAAAATATGGACCTAATTCAATTTTAACAT
TACAAGTTTATAACTAAAAGTGTAAAAAAATAAACACACAAAAACAAAAAAGAATATAAAAAGAA
TGAAAATTATTAAAA
Found at i:42983 original size:23 final size:23
Alignment explanation
Indices: 42955--43000 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
42945 TCGATGCTTA
42955 AAAATTTATAGGATTTAAACTTT
1 AAAATTTATAGGATTTAAACTTT
42978 AAAATTTATAGGATTTAAACTTT
1 AAAATTTATAGGATTTAAACTTT
43001 GATCACTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
AAAATTTATAGGATTTAAACTTT
Found at i:53786 original size:25 final size:24
Alignment explanation
Indices: 53720--53787 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 24
53710 CCCAAGTTTT
* *
53720 TTCTCATTCAATTTTTTTGGTTGAA
1 TTCTCATT-TATTTTTTTGGTTAAA
*
53745 TTCTCATTTAATTTTTTTTTTGTTAAAA
1 TTCTCATTT-A--TTTTTTTGGTT-AAA
53773 TTCTCATTTATTTTT
1 TTCTCATTTATTTTT
53788 CTTTTTTACG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
25 14 0.39
27 11 0.31
28 11 0.31
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.63
Consensus pattern (24 bp):
TTCTCATTTATTTTTTTGGTTAAA
Found at i:68001 original size:14 final size:14
Alignment explanation
Indices: 67982--68017 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
67972 CTTTCTTTTC
*
67982 AAAAAGAGAGAAAA
1 AAAAAGAAAGAAAA
*
67996 AAAAAGAAAGAAAG
1 AAAAAGAAAGAAAA
68010 AAAAAGAA
1 AAAAAGAA
68018 GTATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAA
Found at i:68244 original size:2 final size:2
Alignment explanation
Indices: 68237--68264 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68227 TCCATCCATC
68237 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68265 CACATTATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73643 original size:63 final size:66
Alignment explanation
Indices: 73576--73743 Score: 279
Period size: 63 Copynumber: 2.5 Consensus size: 66
73566 CTTTTAATGG
73576 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGTACAAGCTTCTTC-TTT-TTTTTCTTTTT-T
1 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGTACAAGCTTCTTCTTTTCTTTTTCTTTTTCT
73638 T
66 T
73639 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGTACAAGCTTCTTCTTTTTTTTCTTTTTCTTT
1 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGTACAAGCTTCTTC----TTTTCTTTTTCTTT
73704 TTCTT
62 TTCTT
73709 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGT
1 TTTTGCAAAGTAGACATTTGGGTATAAATGTATGT
73744 TTAAGTTCGA
Statistics
Matches: 98, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
63 47 0.48
68 3 0.03
69 11 0.11
70 37 0.38
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (66 bp):
TTTTGCAAAGTAGACATTTGGGTATAAATGTATGTACAAGCTTCTTCTTTTCTTTTTCTTTTTCT
T
Found at i:76063 original size:93 final size:93
Alignment explanation
Indices: 75904--76090 Score: 358
Period size: 93 Copynumber: 2.0 Consensus size: 93
75894 TGTCCCTCGG
75904 TATCAAAGATGAGCATTTATTTGCCACCAAATAAAGAAGAGTTAAATGTCAAAGTCAGAGTTACC
1 TATCAAAGATGAGCATTTATTTGCCACCAAATAAAGAAGAGTTAAATGTCAAAGTCAGAGTTACC
75969 CTCTTGAATCACTAGTGATCGCTTTTGA
66 CTCTTGAATCACTAGTGATCGCTTTTGA
75997 TATCAAAGATGAGCATTTATTTGCCACCAAATAAAGAAGAGTTAAATGTCAAAGTCATG-GTTAC
1 TATCAAAGATGAGCATTTATTTGCCACCAAATAAAGAAGAGTTAAATGTCAAAGTCA-GAGTTAC
76061 CCTCTTGAATCACTAGTGATCGCTTTTGA
65 CCTCTTGAATCACTAGTGATCGCTTTTGA
76090 T
1 T
76091 TTTATAATAA
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
93 92 0.99
94 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (93 bp):
TATCAAAGATGAGCATTTATTTGCCACCAAATAAAGAAGAGTTAAATGTCAAAGTCAGAGTTACC
CTCTTGAATCACTAGTGATCGCTTTTGA
Found at i:76724 original size:31 final size:31
Alignment explanation
Indices: 76677--76782 Score: 122
Period size: 31 Copynumber: 3.4 Consensus size: 31
76667 TTTGTGCACG
* *
76677 TGGCATGCCACATGTCACTTTTTGAAACACA
1 TGGCATGCCACGTGTCACTTTTTGATACACA
* * *
76708 TGACATGTCACGTGTCACTTTTTGGTACACA
1 TGGCATGCCACGTGTCACTTTTTGATACACA
* ** * *
76739 TGGCGTGATATGTGTCACTTTTTGATACACG
1 TGGCATGCCACGTGTCACTTTTTGATACACA
76770 TGGCATGCCACGT
1 TGGCATGCCACGT
76783 CGGATACCGT
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (31 bp):
TGGCATGCCACGTGTCACTTTTTGATACACA
Found at i:94338 original size:27 final size:27
Alignment explanation
Indices: 94283--94344 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
94273 TCTAAATTTT
*
94283 TATTATTTAAATAATTAAATAATTAAAA
1 TATTATTTAAATAATGAAAT-ATTAAAA
94311 TATTATTT-AATAATGACAAT-TTAGAAA
1 TATTATTTAAATAATGA-AATATTA-AAA
94338 TA-TATTT
1 TATTATTT
94345 GAAAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
26 8 0.26
27 12 0.39
28 11 0.35
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (27 bp):
TATTATTTAAATAATGAAATATTAAAA
Found at i:98327 original size:2 final size:2
Alignment explanation
Indices: 98322--98357 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
98312 TTTAAACTTT
98322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98358 GTGTCATCAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105023 original size:3 final size:3
Alignment explanation
Indices: 105015--105082 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
105005 CATTAACTGA
105015 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
105063 AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AA
105083 ACTCTACGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:123159 original size:79 final size:75
Alignment explanation
Indices: 123020--123179 Score: 275
Period size: 76 Copynumber: 2.1 Consensus size: 75
123010 CTCGGTTCCT
*
123020 TTCCCAACATTGTGAATATTTGATACTCCAACAACAAAATCTTATTGTAATTGTCATTACTTTTT
1 TTCCAAACATTGTGAATATTTGATACTCCAACAACAAAATCTTATTGTAATTGTCATTAC-TTTT
123085 TTTTCCTATTA
65 TTTTCCTATTA
123096 TTCCAAACATTGTGAATATTTGATACTCCAACAACAACGAAATCTTATTGTAATTGTCATTACTT
1 TTCCAAACATTGTGAATATTTGATACTCCAACAAC-A--AAATCTTATTGTAATTGTCATTACTT
123161 TTTTTTCCTATTA
63 TTTTTTCCTATTA
123174 TTCCAA
1 TTCCAA
123180 CAATGAATTT
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
76 34 0.43
77 1 0.01
78 21 0.26
79 24 0.30
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (75 bp):
TTCCAAACATTGTGAATATTTGATACTCCAACAACAAAATCTTATTGTAATTGTCATTACTTTTT
TTTCCTATTA
Found at i:124205 original size:31 final size:30
Alignment explanation
Indices: 124170--124246 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
124160 ATATCGTACA
124170 GGTCCCTCTACTTACAAAAAAGGATCAATTT
1 GGTCCCTCTACTTACAAAAAAGG-TCAATTT
* * **
124201 GGTCCCTTTAC-TATAAAAACTGTCAATTT
1 GGTCCCTCTACTTACAAAAAAGGTCAATTT
124230 GGTCCCTCTACTTACAA
1 GGTCCCTCTACTTACAA
124247 TTTGGTGTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 17 0.44
30 12 0.31
31 10 0.26
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (30 bp):
GGTCCCTCTACTTACAAAAAAGGTCAATTT
Found at i:124599 original size:29 final size:31
Alignment explanation
Indices: 124511--124615 Score: 108
Period size: 31 Copynumber: 3.5 Consensus size: 31
124501 CAGATTCTAT
* ***
124511 TAAGTAGAGGGACTC-AATTGACACCAAATTG
1 TAAGTAGAGGGAC-CAAATTGATACCTTTTTG
*
124542 TAAGTAGAGGGACCAAATTGATA-GTTTTTG
1 TAAGTAGAGGGACCAAATTGATACCTTTTTG
* *
124572 T-AGTAGGGGGACCAAATTGATCCCTTTTTG
1 TAAGTAGAGGGACCAAATTGATACCTTTTTG
*
124602 TAAGTAGAAGGACC
1 TAAGTAGAGGGACC
124616 TGTACAGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 19 0.31
30 12 0.20
31 30 0.49
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (31 bp):
TAAGTAGAGGGACCAAATTGATACCTTTTTG
Found at i:124600 original size:30 final size:30
Alignment explanation
Indices: 124539--124615 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
124529 TGACACCAAA
*
124539 TTGTAAGTAGAGGGACCAAATTGATAGTTT
1 TTGTAAGTAGAGGGACCAAATTGATACTTT
* *
124569 TTGT-AGTAGGGGGACCAAATTGATCCCTTT
1 TTGTAAGTAGAGGGACCAAATTGAT-ACTTT
*
124599 TTGTAAGTAGAAGGACC
1 TTGTAAGTAGAGGGACC
124616 TGTACAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 19 0.47
30 11 0.28
31 10 0.25
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (30 bp):
TTGTAAGTAGAGGGACCAAATTGATACTTT
Found at i:126177 original size:16 final size:17
Alignment explanation
Indices: 126153--126185 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
126143 ACGGTGTACG
126153 TATAAATTATAT-TTAA
1 TATAAATTATATATTAA
*
126169 TATATATTATATATTAA
1 TATAAATTATATATTAA
126186 CAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATAAATTATATATTAA
Found at i:137165 original size:16 final size:16
Alignment explanation
Indices: 137144--137174 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
137134 GACCAACTTT
137144 TTCAAATTAAAAATGG
1 TTCAAATTAAAAATGG
137160 TTCAAATTAAAAATG
1 TTCAAATTAAAAATG
137175 TACTCTAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (16 bp):
TTCAAATTAAAAATGG
Found at i:137865 original size:30 final size:30
Alignment explanation
Indices: 137831--137892 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
137821 ATTTTTATCT
137831 TGACTTTCCTCTTATACCCTCAAATTTTAA
1 TGACTTTCCTCTTATACCCTCAAATTTTAA
*
137861 TGACTTTTCTCTTATACCCTCAAATTTTAA
1 TGACTTTCCTCTTATACCCTCAAATTTTAA
137891 TG
1 TG
137893 GCTTATAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.24, G:0.05, T:0.45
Consensus pattern (30 bp):
TGACTTTCCTCTTATACCCTCAAATTTTAA
Found at i:139276 original size:668 final size:659
Alignment explanation
Indices: 138007--140455 Score: 2723
Period size: 678 Copynumber: 3.7 Consensus size: 659
137997 CAATGTGGCA
* * * *
138007 GAGATTTGGTTAGATGAATATAAATATTCCAAGGAGTCTTGGCGCCTAAAAGCATGCAAAACTGA
1 GAGATTTGGTTAGATGAATATAAATATTCTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGA
*** * * * ** *
138072 GCCGGGGCCCCGGAATGC-ATTTTTAGCCAAAAACCGTGATGGTTAGTACA-AGATTTTAGTTAA
66 GGTAGGGCCCCAGAACGCGA-TTTTAGCCAAAAACAG-GA--GTTAGTACACA-ATTTCGGCTAA
* *
138135 AATTTTACAAAAACTGACCC--AAATTTTTTT-TGTCATTTTTTGGCCACGATAATCATAAAAAA
126 AATTTTACAAAAATTGACCCGAAAATTTTTTTCT-TCAATTTTTGGCCACGATAATCATAAAAAA
* * * * * *
138197 TATTTAATTCAACGTCAAAAAGATTGCAGGGCTTCTCACGCTTCTAATATCGTTTTTCCGA--TT
190 TATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTT
* * *
138260 TTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAAACCTTAAAT
255 TTCCGAATTAATTTCTAA-TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT
* * * * * * * *
138325 CCAATGTGGCTGAGATTTGGTTAGATGAATGTAAATATTCGATGAAGTCTAGGCGCCTAAAATCA
319 CCAATGTGGCTGAGATTTGGTTAGATAAATATAAATATTCTAAGGAGTCTTGGCACCAAAAATCA
* * ** * * * *
138390 TGCAAAATTGAGCCGGGGCCTTGCAACGCGATTTTAGCCAAAAATAGTGATGGTTATTACACGAT
384 TGCAAAACTGAGCCGGGACCCAG-AACACGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGAT
* * * * * *
138455 TTCGACTAAAATTTTGCAAAAACTAACCTGAATTTTTTTTGTCATTTTTTGGCCACAATACTCAT
448 TTTGGCTAAAATTTTGCAAAAACTGACCCGAATTTTTTTTTTCAATTTTTGGCCACAATACTCAT
* * *
138520 AAAAAATATATAATTCAACGTCAAAAAGATTGAAAGGCTTTTCATGCTTCTAATATTGTTTTTCC
513 AAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCC
* *
138585 TATTATTTTCCGAATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCC
578 TATTTTTTTCCGAATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
** **
138650 TTAAATTGAGGGTGATT
643 TTAAATCCAATGTGATT
* * *
138667 GAGATTTGGTTAGATGAATATAAATATTCTAAGGATTCTCAGCGCCAAAAATCATCCAAAACTGA
1 GAGATTTGGTTAGATGAATATAAATATTCTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGA
* * * *
138732 GGTAGGGCCCCGGAACGCGATTTTAGTCAAAAACA-GA-TTATTACACAATTTTGGCTAAAATTT
66 GGTAGGGCCCCAGAACGCGATTTTAGCCAAAAACAGGAGTTAGTACACAATTTCGGCTAAAATTT
* * * *
138795 TGCAAAAGTTGACCCGAAAATTTTTTTGTTCAATTTTTGGCCACGATACTCATAAAAAATATATA
131 TACAAAAATTGACCCGAAAATTTTTTTCTTCAATTTTTGGCCACGATAATCATAAAAAATATATA
** * * * *
138860 ATTCAATACCAAAAATATCGAAAGGCTTTTAACGCTTCTAATATCGTTTTTCTTA-TTTTTCCGA
196 ATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCCGA
* * * * *
138924 ATTAATTTCTAATTAAATCAAAACATGATTTAGATGCTTGTAAAAACAAATCTTTAAATCCAATG
261 ATTAATTTCTAA-TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATG
* * * * *
138989 TGGCTGAGATTTCGTTAGATAAATATAGATTTTCCAAGGAGTCTTGGCACCTAAAATCATGCAAA
325 TGGCTGAGATTTGGTTAGATAAATATAAATATTCTAAGGAGTCTTGGCACCAAAAATCATGCAAA
* *
139054 ACTGAGCTCGGGTCCCAGAACACGTTTTTAGCCAAAAGGAAAAAACAGTAATTTGGTTAGTACAC
390 ACTGAGC-CGGGACCCAGAACACGTTTTTAGCC-------AAAAACAGTGA--TGGTTAGTACAC
*
139119 GATTTTGG-TCAAAATTTTGCAAAAACTGACCCGAATTTTTTTTTTCCAATTTTTAGG-CACGAT
445 GATTTTGGCT-AAAATTTTGCAAAAACTGACCCGAATTTTTTTTTT-CAATTTTT-GGCCACAAT
* *
139182 AGTCATAAAAAATATATAATTCAATGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGT
507 ACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGT
* * *
139247 TTTTCCTATTTTTTTCCGAA-AATATTTCTAATAAATCGAAACAAGATTCAAATACTCGTAAAAA
572 TTTTCCTATTTTTTTCCGAATTA-ATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* * **
139311 CATATCCTTAAATCCAATATGGCT
636 CAAATCCTTAAATCCAATGTGATT
* * *
139335 GAGATTTGGTTAGATGAATATAAATATTCTAAGGATTCTCGAC-ACAAAAAGTCATGCAAAACTG
1 GAGATTTGGTTAGATGAATATAAATATTCTAAGGAGTCTCGGCGCCAAAAA-TCATGCAAAACTG
* * * * *
139399 A-GTCGGGATCCCAGAATGCGATTTTAGCCGACAAAAAAACAGTGATGGTTATTACACGATTTCG
65 AGGTAGGG-CCCCAGAACGCGATTTTAG-C--C--AAAAACAG-GA--GTTAGTACACAATTTCG
* * * *** * *
139463 AC-AAAAATTTAGCAAAAATTGACCCAAAAAAACTTTTCTTCAATTTTTGACCATGATAATCATA
121 GCTAAAATTTTA-CAAAAATTGACCCGAAAATTTTTTTCTTCAATTTTTGGCCACGATAATCATA
** * *
139527 AAAAATATATAATTCAACGTTAAAAAGATTGAAAGACTTTTCACGCTTCTAATATCGTTTGTCCT
185 AAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCT
* * * * *
139592 ATTTTTTTCAAATTAATTTCTAATAAATCGAAGCAAGATTCAGATGTTCGTAAAAATAAATCCTT
250 ATTTTTTCCGAATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * * ** * * * **
139657 AAATCCAAGGTGGCTGAGATTTGGTTATATGAGCATAAGTATTCTTAGGAGTCTCGGTGCCAAAA
315 AAATCCAATGTGGCTGAGATTTGGTTAGATAAATATAAATATTCTAAGGAGTCTTGGCACCAAAA
* * * *
139722 ATCATGTAAAACTGAGCTGGGGACTC-GAA-ACGCATTTTTAGCCAAAAACAGTGATGATTAGTA
380 ATCATGCAAAACTGAGC-CGGGACCCAGAACACG--TTTTTAGCCAAAAACAGTGATGGTTAGTA
* * * ** *
139785 CACAATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAAGTTTTTCGTT-AATTTTTGGCCAT
442 CACGATTTTGGCTAAAATTTTGCAAAAACTGACCCG---AATTTTTTTTTTCAATTTTTGGCCAC
* * * * *
139849 AATACTCATAAAAAAATATATAATTCAACACCAAGAAGATT-AAAGGGCTTCTCACACTTCGAAT
504 AATACTCAT-AAAAAATATATAATTCAACGCCAAAAAGATTGAAA-GGCTTTTCACGCTTCTAAT
* ** *
139913 ATCGTTTTTCCTA-TTTTTTCTGGTTTAATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGT
567 ATCGTTTTTCCTATTTTTTTCCGAATTAATTTCTAA-TAAATCGAAACAAGATTCAGATGCTCGT
139977 AAAAACAAATCCTTAAATCCAATGTGATT
631 AAAAACAAATCCTTAAATCCAATGTGATT
* * * *
140006 GAGATTTGGTTGGATGAATATAAGTATTCTAAGGAGTCTCGGTGCCAAAAATTATGCAAAACTGA
1 GAGATTTGGTTAGATGAATATAAATATTCTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGA
* * * *
140071 GTTAGGGCCCAAGAACGCGTTTTTAGCCAAAAACAGGGATGGTTAGTACACGATTTCGGCTAAAA
66 GGTAGGGCCCCAGAACGCGATTTTAGCCAAAAACA-GGA--GTTAGTACACAATTTCGGCTAAAA
* ** * * *
140136 TTTTACAAAAATTGAACCGAAAA-CATTTTCTTGAATTTTTGGCCACGATACTCATAAAAAA-AA
128 TTTTACAAAAATTGACCCGAAAATTTTTTTCTTCAATTTTTGGCCACGATAATCATAAAAAATAT
* * *
140199 ATAATTCAATGCCAAAAAGATTGAAAGGGTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTT
193 ATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTC
* * * *
140264 CGAATTAATTTCTAATAAATCGAAATAAGATTCAGATGGTCGTAAAAAGAGATCCTTAAATCCAA
258 CGAATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
* * * *
140329 TGTGACTGAGATTTGGTTAGATAAATATAAATATTCTAAAGAGTCTTGGCACAAAAAATCTTGCA
323 TGTGGCTGAGATTTGGTTAGATAAATATAAATATTCTAAGGAGTCTTGGCACCAAAAATCATGCA
* * *
140394 AAACTTAGCCGGGGCCCCAGAACAC-TTTTTAGCCAAAAACAGTGATGGTTATTACACGATTT
388 AAACTGAGCC-GGGACCCAGAACACGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTT
140456 CGTCAATTTT
Statistics
Matches: 1504, Mismatches: 233, Indels: 101
0.82 0.13 0.05
Matches are distributed among these distances:
655 33 0.02
656 1 0.00
657 87 0.06
658 142 0.09
659 7 0.00
660 85 0.06
661 1 0.00
663 34 0.02
664 182 0.12
665 44 0.03
666 47 0.03
667 70 0.05
668 216 0.14
669 44 0.03
670 37 0.02
671 185 0.12
672 19 0.01
673 7 0.00
675 2 0.00
676 3 0.00
677 10 0.01
678 229 0.15
679 19 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (659 bp):
GAGATTTGGTTAGATGAATATAAATATTCTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGA
GGTAGGGCCCCAGAACGCGATTTTAGCCAAAAACAGGAGTTAGTACACAATTTCGGCTAAAATTT
TACAAAAATTGACCCGAAAATTTTTTTCTTCAATTTTTGGCCACGATAATCATAAAAAATATATA
ATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCCGA
ATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
GGCTGAGATTTGGTTAGATAAATATAAATATTCTAAGGAGTCTTGGCACCAAAAATCATGCAAAA
CTGAGCCGGGACCCAGAACACGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTTGGCTA
AAATTTTGCAAAAACTGACCCGAATTTTTTTTTTCAATTTTTGGCCACAATACTCATAAAAAATA
TATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTT
TCCGAATTAATTTCTAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCC
AATGTGATT
Done.