genome.fa.s15381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015381.1 Corchorus olitorius cultivar O-4 contig15414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65035

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2041	331	6.2	329	80	6	2030	35	16	14	33	1.89
1--2031	663	3.1	652	78	7	2381	35	16	14	33	1.89
1148--2939	898	2.0	889	95	1	3212	34	16	14	34	1.89
2203--5450	332	9.9	330	80	7	3471	36	16	14	32	1.89
2203--5353	995	3.2	988	87	4	4243	36	16	14	32	1.89
10200--10284	26	3.3	26	85	9	111	34	25	14	25	1.94
30946--31597	329	2.0	322	93	2	1124	37	11	17	33	1.86
34594--34680	22	3.9	23	72	10	72	34	13	19	32	1.91
34600--34657	23	2.6	23	81	13	75	41	12	15	31	1.84
34523--34888	67	5.3	67	71	17	187	36	9	17	36	1.83
34766--34928	22	7.4	21	75	11	105	35	9	17	37	1.82
34766--34870	45	2.4	45	83	4	133	37	9	18	35	1.83
34766--34888	45	2.8	43	79	9	131	35	8	18	36	1.83
34766--35805	44	24.1	44	68	15	210	37	9	17	35	1.82
34761--35157	22	17.8	22	67	15	102	37	8	17	36	1.81
34985--35186	22	9.0	22	72	10	101	39	7	15	37	1.76
35276--35796	22	24.0	22	70	16	286	37	9	17	35	1.83
35437--35503	16	3.8	16	70	21	53	35	7	16	40	1.77
35427--35525	38	2.6	38	98	0	189	36	8	19	36	1.81
35778--35825	22	2.2	22	85	10	64	50	4	16	29	1.64
35845--35898	22	2.5	22	87	0	72	44	11	11	33	1.75
36680--36730	26	1.9	27	84	4	68	74	5	1	17	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42042--42082	20	2.0	21	95	4	75	9	7	14	68	1.39
45985--46013	2	14.5	2	100	0	58	48	0	0	51	1.00
47719--47745	13	2.1	13	100	0	54	44	7	11	37	1.68
48370--48451	35	2.3	35	97	0	155	34	17	10	37	1.85
49348--49535	31	6.2	31	78	2	184	35	24	22	17	1.95
49348--49535	61	3.1	60	79	6	216	35	24	22	17	1.95
49363--49532	92	1.9	91	81	6	209	37	24	21	17	1.94
60090--60126	11	2.9	13	80	19	51	45	0	0	54	1.00
60081--60126	23	1.9	25	82	8	60	43	4	0	52	1.21

Tables:   1

The End!