Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015383.1 Corchorus olitorius cultivar O-4 contig15416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2951
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36


Found at i:565 original size:2 final size:2

Alignment explanation


    Indices: 560--587  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        550 TACAACAAAC

                                                     
        560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        588 GACATTAAAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1147 original size:17 final size:19

Alignment explanation


    Indices: 1119--1154  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       1109 AAAAGCAAAT

                               
       1119 AAAAGAGAAAAATA-GTGA
          1 AAAAGAGAAAAATATGTGA

                               
       1137 AAAAGA-AAAAATATGTGA
          1 AAAAGAGAAAAATATGTGA

       1155 TGCATATGAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    7  0.41
  18   10  0.59

ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14


Consensus pattern (19 bp):   
AAAAGAGAAAAATATGTGA
Done.