Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015387.1 Corchorus olitorius cultivar O-4 contig15420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 158998
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:1062 original size:317 final size:321
Alignment explanation
Indices: 400--1360 Score: 944
Period size: 332 Copynumber: 2.9 Consensus size: 321
390 ATCCCCGGAC
** * * * * *
400 TAAGGATTTGTTTTTACGAGTATCTAAAACTTGTTTCGATTTAATCAGAAATTAATTTGGAAATA
1 TAAGGATTTGTTTTTACGAACATCTGAATCTTGTTTCGA-TT-ATAAGAAATTAA-TT---CAGA
* * * * * *
465 AAATAGAAAAAACGATATTAGAAGCGTTAAAAAGGATTTCAATTTTTTTGGA-ATTGAATTATAT
60 AAATAG-AAAAACGATATTAAAAGC-CT-GAAA--ACTTCAATCTTTTT-GATGTTGAATTATAT
** * *
529 ATTTTTCT-TGAGTATTTTCTCTAGAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATT
119 ATTTTT-TATGAGTATTTTAGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATT
* * * *
593 TTAGCCGAAATCGTGTAC--GT--T-ACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCAGTTCA
183 TTAGCCGAAATCGTGTACTAATCATCACGATTTTTGGCTAAAAACGCGTTCCGGGGCCC-GGTCT
* * * * *
653 GTTTCACATGATTTTTTGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACGAAATATCAAC
247 GTTT-GCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAACAAAATATCAAC
*
718 CATATTGGATT
311 CACATTGGATT
* *
729 TAAGGATTTGTTTTTACGAACATCTGAATCTTGTTTCTATT-TAAGAAATTAATTC-G-GAA-A-
1 TAAGGATTTGTTTTTACGAACATCTGAATCTTGTTTCGATTATAAGAAATTAATTCAGAAAATAG
* **
789 AAAAACTATATTAAAAGCCCT-TCAA-TT-AATCTTTTTGATGTTGAATTATATATTTTTTATGA
66 AAAAACGATATTAAAAG-CCTGAAAACTTCAATCTTTTTGATGTTGAATTATATATTTTTTATGA
* * * * *
851 TTATTTTAGCCAAAAATTGAGGAAATATCTTTCGGGTTAATTTTTGTAAAATTTTAGCCGGAATC
130 GTATTTTAGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * *
916 GTGTACTAATCATCACGGTTTTTGGCTAAAAACACGTTTCGGGGCCACGGCTCTGTTCTGCATGA
195 GTGTACTAATCATCACGATTTTTGGCTAAAAACGCGTTCCGGGGCC-CGG-TCTGTT-TGCATGA
* * * * **
981 TTTTTGGCGTCGAGACTCCTTGAAATATCTTTATTCATCTAATAAAATCTCAGTCACATTGGATT
257 TTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAACAAAATATCAACCACATTGGATT
** *
1046 TAAGGATTTGTTTTTACGTGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAA
1 TAAGGATTTGTTTTTACGAACATCTGAATCTTGTTTCGATT--ATAAGAAATTAATTCAG-AAAA
* * * * *
1111 TATGAAAAACGATATTAAATGCGTGAAAAGCCCTTCAATCTTTTTGGTGCTGAATTATATTTTTT
63 TA-GAAAAACGATATTAAAAGCCTGAAAA---CTTCAATCTTTTTGATGTTGAATTATA-TATTT
* * *
1176 TTTATGAGTACTGTGGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGC
123 TTTATGAGTATTTTAGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGC
* * * * * * *
1241 TGAAATCGTGTAATAATCATTCACGATTTTTGGCTAAAAACGTGGTCCGGGACCTGGTTTAGTTT
188 CGAAATCGTGTACTAATCA-TCACGATTTTTGGCTAAAAACGCGTTCCGGGGCCCGGTCT-G-TT
* * *
1306 TGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCCAACCAAAT
250 TGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAACAAAAT
1361 CCCAGCAATT
Statistics
Matches: 521, Mismatches: 81, Indels: 57
0.79 0.12 0.09
Matches are distributed among these distances:
310 3 0.01
311 90 0.17
312 2 0.00
313 2 0.00
315 2 0.00
316 29 0.06
317 119 0.23
318 2 0.00
319 1 0.00
320 15 0.03
321 1 0.00
323 2 0.00
324 1 0.00
325 4 0.01
326 27 0.05
328 2 0.00
329 34 0.07
330 2 0.00
331 23 0.04
332 130 0.25
333 30 0.06
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (321 bp):
TAAGGATTTGTTTTTACGAACATCTGAATCTTGTTTCGATTATAAGAAATTAATTCAGAAAATAG
AAAAACGATATTAAAAGCCTGAAAACTTCAATCTTTTTGATGTTGAATTATATATTTTTTATGAG
TATTTTAGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCG
TGTACTAATCATCACGATTTTTGGCTAAAAACGCGTTCCGGGGCCCGGTCTGTTTGCATGATTTT
TGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAACAAAATATCAACCACATTGGATT
Found at i:3033 original size:20 final size:20
Alignment explanation
Indices: 3010--3050 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
3000 TATTCAAAAT
3010 AAGTGAAACAATTACAAAGG
1 AAGTGAAACAATTACAAAGG
3030 AAGTGAAACAATTACAAAGG
1 AAGTGAAACAATTACAAAGG
3050 A
1 A
3051 GTCCATATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.20, T:0.15
Consensus pattern (20 bp):
AAGTGAAACAATTACAAAGG
Found at i:15935 original size:334 final size:331
Alignment explanation
Indices: 14921--16851 Score: 1673
Period size: 334 Copynumber: 5.9 Consensus size: 331
14911 ATCTCAGTAA
* *
14921 CATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
1 CATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
* * * * * *
14986 TTTAAAAAAATAAGAATTAC-AATATTAAATGCGTGAAAAGCCCTCCAATATTTTTGGCATTAAA
66 TTTGAAAAAATAAGAA-AACGAA-ATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTAAA
* ** * * *
15050 TTATATA-TTTTTATAAGCGTTTTAGCCAAAAATTGA-GCAGAAATCTTTCGTGTCAATTTTTGC
129 TTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAATTTTTGC
* ** * *
15113 ACAATTTTAGCCAAAATCGTGTACTAACTAACCATCAC-GGTGTTTGGCTAAAAACGCATTCCGG
194 AAAATTTTAGCCAAAATCGTGTACTAA-T---CATCACAACT-TTTGGCTTAAAACGCGTTCCGG
** * * * ** *
15177 GGCCCTAGCTCAATTTAGCATAATTTTTGGCGTTGAGACTCCTTAAAATATCTATATTCATCTAA
254 GGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAA
15242 TAAAA---T-G--
319 TAAAATCTTAGCC
* * * * * *
15249 -TTTGCATTTAAGGATTTATATTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATAAAA
1 CATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
* * * * * * *
15313 TTAGAAAAAGTATGAACAACGATATTAAAAGCGTGAAAAGCACTTCAATCTTTTTGGTGTTGAAT
66 TTTGAAAAAATAAGAA-AACGAAATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTAAAT
* * * * **
15378 TATATATTTTTTATGACTATTTTAGCTAAAAATTGAGG-AAATATCTTTCGAGTCAATTTTTATA
130 TATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAATTTTTGCA
* * * * * *
15442 AAATTTTAGTCTAAATCGTGTAATAACCATCACAACTTTTGGC-TAACAAAGCGTTCTGGGGCCC
195 AAATTTTAGCCAAAATCGTGTACTAATCATCACAACTTTTGGCTTAA-AACGCGTTCCGGGGCCC
* * ** * * *
15506 CGGCTCAGTTTTGCATGATTTTTGGCGCCAAGTCTCCTTGGGATATCCATATTCGTCTAATCAAA
259 CGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATAAAA
*
15571 TCTCAGCC
324 TCTTAGCC
* * * *
15579 ACATTGGATTTAA-AATTTTGTTTTTACGTGTATCTGAATCTTGTTTCGATTTAATTA-AAATTT
1 -CATTGCATTTAAGGA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA-TT
* * *
15642 AATTTTCAAAAATATAAGAAATACGAAATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTT
63 AATTTTGAAAAA-ATAAGAAA-ACGAAATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTT
* * * * ** * *
15707 AAATTATTTATATTTAATGAGTATTTTATCCAAAAATTGAGGAAAAAAAATTTTGTGTC-ATCTT
126 AAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAAT-TT
* *** * * ** *
15771 TTGCAAAAATTTAGCCAAAATCGTGTACTAATCATCATGGCTTTTGGATGAAAACATGTTTCGGG
190 TTGCAAAATTTTAGCCAAAATCGTGTACTAATCATCACAACTTTTGGCTTAAAACGCGTTCCGGG
*
15836 GCCCCGGCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAAT
255 GCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAAT
*
15901 AAAATGTTAGCC
320 AAAATCTTAGCC
* * *
15913 GCATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTATTTAGATATTAG
1 -CATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
* * * * * *
15978 TTTAGAAAAAATATGAAAAACGATATTAAAATCGTGAAAAAACCCTTCAATCTTTTTGGCGTTGA
65 TTTTGAAAAAATAAG-AAAACGAAATTAAAAGCGTG-AAAAGCCCTTCAATCTTTTTGGCGTTAA
* * * * *
16043 ATTATAT-TTTTTTATGAGTATTGTGGCTAAAATTTGAGG-AAATATCTTTCGGGTCAATTTTTT
128 ATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAA-TTTTT
* * * * * * *
16106 GCAAAATTTTAACCGAAATCATGTAATAATCTTCACAATTTTTTG-TTAGAAACGCGTTCCGGGG
192 GCAAAATTTTAGCCAAAATCGTGTACTAATCATCACAACTTTTGGCTTA-AAACGCGTTCCGGGG
* * * * * * *
16170 -ACCGGTTCAGTTTTGCATGGTTTTTGGTGCCGAGACTCCTTTAAATATCTATATTCATCTAGTC
256 CCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATA
16234 AAATC-T---C
321 AAATCTTAGCC
* * * *
16241 CA--GCCA-TT---G--TT-TTTATA--AGCATTTGAAT-TATATTTCAATTTAATTAGAAATTA
1 CATTG-CATTTAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGAAATTA
* * * * * * *
16294 ATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGTCGTTGA
64 ATTTTGAAAAAATAAG-AAAACGAAATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTAA
* * * * * * *
16359 ATTATATATTTTTTATAAGTATTATGGCTAAAAATTGA-GAAAAAATATTTGGGGTCAATTTTTA
128 ATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAATTTTTG
* * * * *****
16423 CAAAATATTAGCCGAAATCATGTACCAA-CAT-GGTTTTTTTGGCTTAAAACGCGTTCCGGGGCC
193 CAAAATTTTAGCCAAAATCGTGTACTAATCATCACAACTTTTGGCTTAAAACGCGTTCCGGGGCC
* * * * *
16486 CTGGGTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTTATCTAATAAA
258 CCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATAAA
*
16551 ATCTCAGCC
323 ATCTTAGCC
* * * *
16560 ACATTGGATTTAAGGATTTGTTTTTACGAGCATAC-AAATCTTATTTCGATTTAATTACAAATTA
1 -CATTGCATTTAAGGATTTGTTTTTACGAGCAT-CTGAATCTTGTTTCGATTTAATTAGAAATTA
** * * * * * * * *
16624 ATTCAGAAAAAGTAA-AAAA-AAATATTAGAAGCGTAAAAAACCCTTTAATATTTTTAGCGTTAA
64 ATTTTGAAAAAATAAGAAAACGAA-ATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTAA
* * * *
16687 ATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGG-AAATATCTTTTGTGTCAATTTTTA
128 ATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAATTTTTG
* *** * * * * * * * * *
16751 TAAAATTTTAGTTGAAATCGTGTGA-TAATCATCACGATTTTTAGCTAAAAATGTGTTACAGAGC
193 CAAAATTTTAGCCAAAATCGTGT-ACTAATCATCACAACTTTTGGCTTAAAACGCGTTCCGGGGC
** * *
16815 CCCGAATCAGTTTTGCATGATTTTTTGCGCCAAGACT
257 CCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACT
16852 TTGAGATGGG
Statistics
Matches: 1287, Mismatches: 260, Indels: 110
0.78 0.16 0.07
Matches are distributed among these distances:
314 21 0.02
315 63 0.05
316 63 0.05
317 103 0.08
319 6 0.00
320 4 0.00
321 1 0.00
322 4 0.00
323 2 0.00
324 76 0.06
325 5 0.00
326 2 0.00
327 116 0.09
328 186 0.14
329 6 0.00
330 94 0.07
331 6 0.00
332 130 0.10
333 175 0.14
334 219 0.17
335 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (331 bp):
CATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
TTTGAAAAAATAAGAAAACGAAATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTAAATT
ATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAATCTTTCGGGTCAATTTTTGCAA
AATTTTAGCCAAAATCGTGTACTAATCATCACAACTTTTGGCTTAAAACGCGTTCCGGGGCCCCG
GCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATC
TTAGCC
Found at i:16182 original size:666 final size:659
Alignment explanation
Indices: 14908--16851 Score: 2108
Period size: 666 Copynumber: 3.0 Consensus size: 659
14898 ATCGACTACC
*
14908 CAAATCTCAGTAACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
1 CAAATCTCAG-CACATTGGATTTAA-AATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
* *
14973 ATTAGAAATTAATTTTAAAAAAATAAGAATTAC-AATATTAAATGCGTGAAAAGCCCTCCAATAT
64 ATTAGAAATTAATTTT-AAAAAATAAGAAATACGAA-ATTAAAAGCGTGAAAAGCCCTCCAATAT
* ** * * *
15037 TTTTGGCATTAAATTATATATTTTTATAAGCGTTTTAGCCAAAAATTGAGCAGAAATCTTTCGTG
127 TTTTGGCGTTAAATTATATATTTTTATAAGTATTTTAGCCAAAAATTGAGAAAAAATATTTCGTG
* * *
15102 TCAATTTTTGCACAATTTTAGCCAAAATCGTGTACTAACTAACCATCACGGTGTTTGGCTAAAAA
192 TCAATTTTTGCAAAAATTTAGCCAAAATCGTGTACTAA-T---CATCATGGT-TTTGGCTAAAAA
* * * * * ** *
15167 CGCATTCCGGGGCCCTAGCTCAATTTAGCATAATTTTTGGCGTTGAGACTCCTTAAAATATCTAT
252 CGCGTTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTAT
* *
15232 ATTCATCTAATAAAATG-T------TTGCATTTAAGGATTTATATTTACGAGCATCTGAATCTTG
317 ATTCATCTAATAAAATGTTAGCCCATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * *
15290 TTTCGATTTAATTATAAATAAAATTAGAAAAAGTATGAACAACGATATTAAAAGCGTG-AAAAGC
382 TTTCGATTTAATTACAAATTAATTTAGAAAAAGTATGAAAAACGATATTAAAAGCGTGAAAAAAC
* * *
15354 ACTTCAATCTTTTTGGTGTTGAATTATATATTTTTTATGACTATTTTAGCTAAAAATTGAGGAAA
447 CCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCTAAAAATTGAGGAAA
* * *
15419 TATCTTTCGAGTCAATTTTTATAAAATTTTAGTCTAAATCGTGTAATAACCATCACAACTTTTGG
512 TATCTTTCGAGTCAATTTTTATAAAATTTTAGTCGAAATCGTGTAATAATCATCACAATTTTTGG
* * * **
15484 CTAACAAAGCGTTCTGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGTCTCCTTGGGA
577 CTAACAAAGCGTTCCGGGGCACCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
*
15549 TATCCATATTCGTCTAAT
642 TATCCATATTCATCTAAT
* *
15567 CAAATCTCAGCCACATTGGATTTAAAATTTTGTTTTTACGTGTATCTGAATCTTGTTTCGATTTA
1 CAAATCTCAG-CACATTGGATTTAAAA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
* *
15632 ATTA-AAATTTAATTTTCAAAAATATAAGAAATACGAAATTAAAAGCGTGAAAAGTCCTCCAATC
64 ATTAGAAA-TTAATTTT-AAAAA-ATAAGAAATACGAAATTAAAAGCGTGAAAAGCCCTCCAATA
* * * * * *
15696 TTTTTGGCGTTAAATTATTTATATTTAATGAGTATTTTATCCAAAAATTGAGGAAAAAAAATTTT
126 TTTTTGGCGTTAAATTATATAT-TTTTATAAGTATTTTAGCCAAAAATTGA-GAAAAAATATTTC
* *
15761 GTGTC-ATCTTTTGCAAAAATTTAGCCAAAATCGTGTACTAATCATCATGGCTTTTGGATGAAAA
189 GTGTCAAT-TTTTGCAAAAATTTAGCCAAAATCGTGTACTAATCATCATGG-TTTTGGCTAAAAA
** * * *
15825 CATGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTAT
252 CGCGTTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTAT
15890 ATTCATCTAATAAAATGTTAGCCGCATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
317 ATTCATCTAATAAAATGTTAGCC-CATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * * * *
15955 GTTTCGATTTATTTAGATATTAGTTTAGAAAAAATATGAAAAACGATATTAAAATCGTGAAAAAA
381 GTTTCGATTTAATTACAAATTAATTTAGAAAAAGTATGAAAAACGATATTAAAAGCGTGAAAAAA
* * *
16020 CCCTTCAATCTTTTTGGCGTTGAATTATAT-TTTTTTATGAGTATTGTGGCTAAAATTTGAGGAA
446 CCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCTAAAAATTGAGGAA
* ** * *
16084 ATATCTTTCGGGTCAATTTTT-TGCAAAATTTTAACCGAAATCATGTAATAATCTTCACAATTTT
511 ATATCTTTCGAGTCAATTTTTAT--AAAATTTTAGTCGAAATCGTGTAATAATCATCACAATTTT
* * * * * * *
16148 TTGTTAGA-AACGCGTTCCGGGG-ACCGGTTCAGTTTTGCATGGTTTTTGGTGCCGAGACTCCTT
574 TGGCTA-ACAAAGCGTTCCGGGGCACCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT
* * *
16211 TAAATATCTATATTCATCTAGT
638 GAAATATCCATATTCATCTAAT
* * * *
16233 CAAATCTCCAGC-CATT-G---------TT-TTTATA--AGCATTTGAAT-TATATTTCAATTTA
1 CAAATCT-CAGCACATTGGATTTAAAATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTA
* * * * * * *
16283 ATTAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTT
64 ATTAGAAATTAATTT-TAAAAAATAAGAAATACGAAATTAAAAGCGTGAAAAGCCCTCCAATATT
* * * * * * *
16348 TTTGTCGTTGAATTATATATTTTTTATAAGTATTATGGCTAAAAATTGAGAAAAAATATTTGGGG
128 TTTGGCGTTAAATTATATA-TTTTTATAAGTATTTTAGCCAAAAATTGAGAAAAAATATTTCGTG
* * * * ** ** *
16413 TCAATTTTTAC-AAAATATTAGCCGAAATCATGTACCAA-CATGGTTTTTTTGGCTTAAAACGCG
192 TCAATTTTTGCAAAAAT-TTAGCCAAAATCGTGTACTAATCATCATGGTTTTGGCTAAAAACGCG
* * * *
16476 TTCCGGGGCCCTGGGTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTT
256 TTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTC
* * * * *
16541 ATCTAATAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATAC-AAATCTTATT
321 ATCTAATAAAATGTTAGCC-CATTGCATTTAAGGATTTGTTTTTACGAGCAT-CTGAATCTTGTT
* ** *
16605 TCGATTTAATTACAAATTAATTCAGAAAAAGTA--AAAAAAAATATTAGAAGCGT-AAAAAACCC
384 TCGATTTAATTACAAATTAATTTAGAAAAAGTATGAAAAACGATATTAAAAGCGTGAAAAAACCC
* * * * *
16667 TTTAATATTTTTAGCGTTAAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAATA
449 TTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCTAAAAATTGAGGAAATA
* * * * * *
16732 TCTTTTGTGTCAATTTTTATAAAATTTTAGTTGAAATCGTGTGATAATCATCACGATTTTTAGCT
514 TCTTTCGAGTCAATTTTTATAAAATTTTAGTCGAAATCGTGTAATAATCATCACAATTTTTGGCT
* * * * * ** *
16797 AA-AAATGTGTTACAGAGCCCCGAATCAGTTTTGCATGATTTTTTGCGCCAAGACT
579 AACAAA-GCGTTCCGGGGCACCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACT
16852 TTGAGATGGG
Statistics
Matches: 1080, Mismatches: 173, Indels: 78
0.81 0.13 0.06
Matches are distributed among these distances:
643 3 0.00
644 76 0.07
645 95 0.09
646 1 0.00
647 154 0.14
648 10 0.01
649 38 0.04
650 77 0.07
651 35 0.03
652 3 0.00
653 5 0.00
654 2 0.00
658 91 0.08
659 77 0.07
660 54 0.05
661 28 0.03
662 44 0.04
664 1 0.00
665 5 0.00
666 196 0.18
667 84 0.08
668 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (659 bp):
CAAATCTCAGCACATTGGATTTAAAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
TAGAAATTAATTTTAAAAAATAAGAAATACGAAATTAAAAGCGTGAAAAGCCCTCCAATATTTTT
GGCGTTAAATTATATATTTTTATAAGTATTTTAGCCAAAAATTGAGAAAAAATATTTCGTGTCAA
TTTTTGCAAAAATTTAGCCAAAATCGTGTACTAATCATCATGGTTTTGGCTAAAAACGCGTTCCG
GGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTA
ATAAAATGTTAGCCCATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
AATTACAAATTAATTTAGAAAAAGTATGAAAAACGATATTAAAAGCGTGAAAAAACCCTTCAATC
TTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCTAAAAATTGAGGAAATATCTTTCG
AGTCAATTTTTATAAAATTTTAGTCGAAATCGTGTAATAATCATCACAATTTTTGGCTAACAAAG
CGTTCCGGGGCACCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCCATAT
TCATCTAAT
Found at i:20970 original size:31 final size:30
Alignment explanation
Indices: 20932--21034 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 30
20922 TTTGGCTAAT
*
20932 TGCTCAAATAAGACCCTAATGTTTGCCAAAA
1 TGCTCAAATAAG-GCCTAATGTTTGCCAAAA
* * * **
20963 TGCTCAAATAAGGCCTGATCTTT--TAATT
1 TGCTCAAATAAGGCCTAATGTTTGCCAAAA
*
20991 TGGC-CAAATAAGGGCCTAACGTTTGCCAAAA
1 T-GCTCAAATAA-GGCCTAATGTTTGCCAAAA
21022 TGCTCAAATAAGG
1 TGCTCAAATAAGG
21035 GCTCGATCTT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
28 10 0.18
29 11 0.20
30 12 0.22
31 22 0.40
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (30 bp):
TGCTCAAATAAGGCCTAATGTTTGCCAAAA
Found at i:21035 original size:31 final size:31
Alignment explanation
Indices: 20932--21095 Score: 94
Period size: 31 Copynumber: 5.5 Consensus size: 31
20922 TTTGGCTAAT
** *
20932 TGCTCAAATAAGACCCTAATGTTTGCCAAAA
1 TGCTCAAATAAGGGCCTAACGTTTGCCAAAA
* * **
20963 TGCTCAAATAA-GGCCTGATC-TTT--TAATT
1 TGCTCAAATAAGGGCCT-AACGTTTGCCAAAA
20991 TGGC-CAAATAAGGGCCTAACGTTTGCCAAAA
1 T-GCTCAAATAAGGGCCTAACGTTTGCCAAAA
* * * **
21022 TGCTCAAATAAGGGCTCGATC-TTT--TAATT
1 TGCTCAAATAAGGGC-CTAACGTTTGCCAAAA
**
21051 TGGCT-AAATAAGGGTTTAACGTTTGCCAAAA
1 T-GCTCAAATAAGGGCCTAACGTTTGCCAAAA
*
21082 TACTCAAATAAGGG
1 TGCTCAAATAAGGG
21096 TCTGACATCC
Statistics
Matches: 96, Mismatches: 24, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
28 14 0.15
29 25 0.26
30 13 0.14
31 41 0.43
32 3 0.03
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (31 bp):
TGCTCAAATAAGGGCCTAACGTTTGCCAAAA
Found at i:21071 original size:60 final size:59
Alignment explanation
Indices: 20936--21100 Score: 240
Period size: 60 Copynumber: 2.8 Consensus size: 59
20926 GCTAATTGCT
** * *
20936 CAAATAAGACCCTAATGTTTGCCAAAATGCTCAAATAAGGCCTGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCTGATCTTTTAATTTGGC
20995 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCT-GATCTTTTAATTTGGC
* ** *
21055 TAAATAAGGGTTTAACGTTTGCCAAAATACTCAAATAAGGGTCTGA
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGG-CTGA
21101 CATCCAAAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
59 39 0.41
60 55 0.57
61 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (59 bp):
CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCTGATCTTTTAATTTGGC
Found at i:21180 original size:31 final size:31
Alignment explanation
Indices: 21137--21240 Score: 99
Period size: 31 Copynumber: 3.4 Consensus size: 31
21127 AACTGACTCC
* *
21137 AGGCCCTCATTTGAGCATTTTCGATAACGTT
1 AGGCCCTTATTTGAGCATTTTCGATAAAGTT
* ** *
21168 AGGCCCTTATTTGACCAAATT--A-AAAGAT
1 AGGCCCTTATTTGAGCATTTTCGATAAAGTT
*
21196 CGAGCCCTTATTTGAGCATTTTCGATAATA-TT
1 AG-GCCCTTATTTGAGCATTTTCGATAA-AGTT
21228 AGGCCCTTATTTG
1 AGGCCCTTATTTG
21241 GCCAAATTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
28 5 0.09
29 17 0.30
31 29 0.52
32 4 0.07
33 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (31 bp):
AGGCCCTTATTTGAGCATTTTCGATAAAGTT
Found at i:21215 original size:60 final size:60
Alignment explanation
Indices: 21139--21301 Score: 220
Period size: 60 Copynumber: 2.7 Consensus size: 60
21129 CTGACTCCAG
*
21139 GCCCTCATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCGA
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCGA
** * * *
21199 GCCCTTATTTGAGCATTTTCGATAATATTAGGCCCTTATTTGGCCAAATTAAAAGATTGG
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCGA
* * * *
21259 GTCCTTATTTAAGCATTTTGGCA-AACGTTAGGCTCTTATTTGA
1 GCCCTTATTTGAGCATTTTCG-ATAACGTTAGGCCCTTATTTGA
21302 GCAATTAGTC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
60 88 0.99
61 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (60 bp):
GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCGA
Found at i:24362 original size:2 final size:2
Alignment explanation
Indices: 24355--24381 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24345 TGTAAAAGAA
24355 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24382 GAGTAGTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32113 original size:1 final size:1
Alignment explanation
Indices: 32107--32133 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
32097 CTATGGTATC
32107 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
32134 CTATGGGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:41893 original size:75 final size:75
Alignment explanation
Indices: 41770--41909 Score: 253
Period size: 75 Copynumber: 1.9 Consensus size: 75
41760 TGGGGAAGTG
* * *
41770 AATGTATTTGCACATTCTCTAGCTAAGATTGAGCTGGATAATCGTGTGGTGTGGGACTATTTCTC
1 AATGTATTTGCACATTCTCTAGATAAGATTGAGCTGGATAATCGTGTGGTGCGAGACTATTTCTC
41835 CCGGTGTGTC
66 CCGGTGTGTC
41845 AATGTATTTGCACATTCTCTAGATAAGATTGAGCTGGATAATCGTGTGGTGCGAGACTATTTCTC
1 AATGTATTTGCACATTCTCTAGATAAGATTGAGCTGGATAATCGTGTGGTGCGAGACTATTTCTC
41910 TTGCCGTTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 62 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (75 bp):
AATGTATTTGCACATTCTCTAGATAAGATTGAGCTGGATAATCGTGTGGTGCGAGACTATTTCTC
CCGGTGTGTC
Found at i:44401 original size:20 final size:22
Alignment explanation
Indices: 44378--44417 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
44368 TTAAAAATCA
44378 TAGG-AAGGTTA-CAAAATTCT
1 TAGGAAAGGTTATCAAAATTCT
*
44398 TAGGAAAGTTTATCAAAATT
1 TAGGAAAGGTTATCAAAATT
44418 TTATAGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.42, C:0.07, G:0.17, T:0.33
Consensus pattern (22 bp):
TAGGAAAGGTTATCAAAATTCT
Found at i:44432 original size:22 final size:22
Alignment explanation
Indices: 44407--44479 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
44397 TTAGGAAAGT
*
44407 TTATCAAAATTTTATAGTTAGG
1 TTATCAAAATTTTATAGTTAGA
* * *
44429 TTATCAAAGTTTGT-TA-TGGAGT
1 TTATCAAAATTT-TATAGT-TAGA
*
44451 TTATCACAATTTTATAGTTA-A
1 TTATCAAAATTTTATAGTTAGA
44472 TTATCAAA
1 TTATCAAA
44480 TCATATGGTG
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
21 9 0.23
22 28 0.72
23 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (22 bp):
TTATCAAAATTTTATAGTTAGA
Found at i:44502 original size:40 final size:42
Alignment explanation
Indices: 44407--44507 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 42
44397 TTAGGAAAGT
* ** *
44407 TTATCAAAATTTTATAGTTAGGTTATCAAAGTTTGTTATGGAGT
1 TTATCAAAATTTTATAGTTAGATTATCAAA--TTCATATGGAGA
* *
44451 TTATCACAATTTTATAGTTA-ATTATCAAA-TCATATGGTGA
1 TTATCAAAATTTTATAGTTAGATTATCAAATTCATATGGAGA
*
44491 TTATCAAAATTTAATAG
1 TTATCAAAATTTTATAG
44508 GATAGTCATC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 22 0.45
43 8 0.16
44 19 0.39
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.44
Consensus pattern (42 bp):
TTATCAAAATTTTATAGTTAGATTATCAAATTCATATGGAGA
Found at i:45928 original size:19 final size:19
Alignment explanation
Indices: 45904--45940 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
45894 GTACAATACC
45904 TAATCTAATCTGTACAGTG
1 TAATCTAATCTGTACAGTG
*
45923 TAATCTCATCTGTACAGT
1 TAATCTAATCTGTACAGT
45941 TGCTAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (19 bp):
TAATCTAATCTGTACAGTG
Found at i:57906 original size:27 final size:28
Alignment explanation
Indices: 57862--57915 Score: 83
Period size: 27 Copynumber: 1.9 Consensus size: 28
57852 CTTGGAAAGA
57862 TTTTTTGGGAAATTAATTAACTTGTATTT
1 TTTTTTGGGAAA-TAATTAACTTGTATTT
*
57891 TTTTTTGTGAAA-AATTAACTTGTAT
1 TTTTTTGGGAAATAATTAACTTGTAT
57916 ATATAGAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 13 0.54
29 11 0.46
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.54
Consensus pattern (28 bp):
TTTTTTGGGAAATAATTAACTTGTATTT
Found at i:58500 original size:19 final size:20
Alignment explanation
Indices: 58450--58507 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
58440 GCTGCTCTAA
*
58450 TAATCTCATATGTACAGTACC
1 TAATCTCATCTGTACAGTA-C
* * *
58471 TAATATAATCTGTACAGT-G
1 TAATCTCATCTGTACAGTAC
58490 TAATCTCATCTGTACAGT
1 TAATCTCATCTGTACAGT
58508 TGCTAAATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 16 0.52
21 15 0.48
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TAATCTCATCTGTACAGTAC
Found at i:63324 original size:6 final size:6
Alignment explanation
Indices: 63315--63343 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
63305 TGTGAATGTC
63315 AATATG AATATG AATATG AATATG AATAT
1 AATATG AATATG AATATG AATATG AATAT
63344 ATAATGGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (6 bp):
AATATG
Found at i:80932 original size:16 final size:15
Alignment explanation
Indices: 80913--80952 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
80903 AATGAGGGAG
80913 GAAAGAAATAGAAAGA
1 GAAAGAAAT-GAAAGA
80929 GAAAGGAAATGAAAGA
1 GAAA-GAAATGAAAGA
*
80945 AAAAGAAA
1 GAAAGAAA
80953 ATGGAAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 13 0.59
17 5 0.23
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (15 bp):
GAAAGAAATGAAAGA
Found at i:80955 original size:16 final size:15
Alignment explanation
Indices: 80914--80952 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
80904 ATGAGGGAGG
80914 AAAGAAATAGAAAGAGA
1 AAAGAAAT-GAAAGA-A
*
80931 AAGGAAATGAAAGAA
1 AAAGAAATGAAAGAA
80946 AAAGAAA
1 AAAGAAA
80953 ATGGAAGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 7 0.35
16 6 0.30
17 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (15 bp):
AAAGAAATGAAAGAA
Found at i:80968 original size:26 final size:26
Alignment explanation
Indices: 80910--80969 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
80900 ATAAATGAGG
*
80910 GAGGAAAGAAATAGAAAGAGAAAGGA
1 GAGGAAAGAAAAAGAAAGAGAAAGGA
* * *
80936 AATGAAAGAAAAAGAAA-ATGGAAGGA
1 GAGGAAAGAAAAAGAAAGA-GAAAGGA
80962 GAGGAAAG
1 GAGGAAAG
80970 GAGAAAGGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (26 bp):
GAGGAAAGAAAAAGAAAGAGAAAGGA
Found at i:99522 original size:3 final size:3
Alignment explanation
Indices: 99514--99539 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
99504 AGCTACTGAT
99514 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
99540 TGATGATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:104697 original size:14 final size:15
Alignment explanation
Indices: 104678--104706 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
104668 CGTCTTGGAA
104678 ATTTAATAAA-AGTG
1 ATTTAATAAACAGTG
104692 ATTTAATAAACAGTG
1 ATTTAATAAACAGTG
104707 TTATATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.34
Consensus pattern (15 bp):
ATTTAATAAACAGTG
Found at i:125832 original size:2 final size:2
Alignment explanation
Indices: 125827--125861 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
125817 CTCTCTCTCT
*
125827 CA CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
125862 GTCCATTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:140812 original size:2 final size:2
Alignment explanation
Indices: 140805--140846 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
140795 AAAATGCTTG
140805 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
140847 GTAAGTAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:142535 original size:87 final size:87
Alignment explanation
Indices: 142428--142601 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
142418 TTGAATTGTA
*
142428 ATGAGATTTCATTGGGTTTGTTTGTTGGGAAAGGGGTTTGTTGGCTCATAGATTAGCATTTCGGT
1 ATGAGATTTCATTAGGTTTGTTTGTTGGGAAAGGGGTTTGTTGGCTCATAGATTAGCATTTCGGT
142493 AATGTAGCTAATCATGTAGCGG
66 AATGTAGCTAATCATGTAGCGG
142515 ATGAGATTTCATTAGGTTTGTTTGTTGGGAAAGGGGTTTGTTGGCTCATAGATTAGCATTTCGGT
1 ATGAGATTTCATTAGGTTTGTTTGTTGGGAAAGGGGTTTGTTGGCTCATAGATTAGCATTTCGGT
142580 AATGTAGCTAATCATGTAGCGG
66 AATGTAGCTAATCATGTAGCGG
142602 TGTACGAGTC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.22, C:0.09, G:0.30, T:0.38
Consensus pattern (87 bp):
ATGAGATTTCATTAGGTTTGTTTGTTGGGAAAGGGGTTTGTTGGCTCATAGATTAGCATTTCGGT
AATGTAGCTAATCATGTAGCGG
Found at i:156233 original size:2 final size:2
Alignment explanation
Indices: 156222--156274 Score: 58
Period size: 2 Copynumber: 27.0 Consensus size: 2
156212 GGTAGTCATA
*
156222 AT AT -T AT AT AT AT AT AT AT AT AT AT AC ACT AT AT ACT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT
156265 -T AT AT -T AT AT
1 AT AT AT AT AT AT
156275 TATTAAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
1 3 0.07
2 38 0.86
3 3 0.07
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:157975 original size:309 final size:310
Alignment explanation
Indices: 156876--158579 Score: 1169
Period size: 309 Copynumber: 5.2 Consensus size: 310
156866 CCCTTTAATG
* *
156876 TTTTTGTTGTTGAATTATATATCTTTTATGAGTGTATTGGCCAAAAATTGAGGGAAAATATTTCG
1 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
* * * * * *
156941 GGTCAAGTTTTGCGAAAATTTAGCCGAAATCGTATATTAGCCGTCATGGTTTTTGGCTGAAAATG
66 GGTCAAATTTTACGAAAATTTAGCCGAAAT-TTATATTA----TCA--CTTTTTGGCTAAAAAAG
* * * * * *
157006 CGTTCCGGGACC-CGGCTCAGTTCTGCATAATTTTTGACGCCAAGACTCCTTCAAATATCTAAAT
124 CGTTCCGGG-CCTCGACTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATAT
* * * * * *
157070 TCATCCTAATAATTCTCAAACACAAGGATATT-TTTTTAATGGGCATCAGACTCTTGTTTCGATT
188 TTATCTTAATAAATCTCAGACACAAGGAT-TTGTTTTT-ATGAGCATCAGAATCTTGTTTCGATT
* * *
157134 TAATTAGAAATTAATTCGGAAGAAAATAAGATAAACGATATTAGAAGAGTGAAAATCCCATCAAT
251 TAATTAGAAATTAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGAGTG--AAT----TCAAT
157199 C
310 C
** * * *
157200 TTTTTGTCGTTGAATTATATAT-TTTTCATGAGCCTTTTGGCC-TAAATTGAGGAAAAATATTTC
1 TTTTTGTCGTTGAATTATATATCTTTT-ATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTC
* * * * * *
157263 GGGTCAACTTTTGCGAAATTTTAGCTGCAAAATTT-TATTCCATCACGGTTTTGGTTAAAAACA-
65 GGGTCAAATTTTACGAAAATTTAGC--CGAAATTTATATT--ATCAC-TTTTTGGCTAAAAA-AG
* * * ** *
157326 CGTTCCGGGGCCCCGACTTAGTTTTGCATGATTTTTGGTGCCAAGACTCCTTTAAATATATATAT
124 CGTTCC-GGGCCTCGACTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATAT
** * *
157391 TTATCTTCCTAAATCTCAAGCACATTGGATTTAATGATTTGTTTTTATGAGCATCAGAATCTTGT
188 TTATCTTAATAAATCTC-AG-AC-----A--CAAGGATTTGTTTTTATGAGCATCAGAATCTTGT
* * *
157456 TTCGATTTAATTAGAAA-TAAATCGGGAAAAAATAGGAAAAACAATATTAGAAGAGTGAAAATCC
244 TTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGAGTG--AA---
157520 CTTCAATC
304 -TTCAATC
* * *
157528 TTTTTGTCGTTGAATTATATATC-TTTATGAGTATATTAGTCAAAAATTGAGGTAAAATATTTCG
1 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
* * ** *
157592 GGTC-AATTTCTACTAAAATTAAGCCG-AA---A-ATTA-CGGTTTTTGGCTAAAAACGCGTTTC
66 GGTCAAATTT-TACGAAAATTTAGCCGAAATTTATATTATCACTTTTTGGCTAAAAAAGCG-TTC
* * * *
157650 AGGG-CTCCAACTCAGTTTTGCATAATTTTTGGCACCAAGAGTCCTTCAAATATTTATATTTATC
129 CGGGCCT-CGACTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATATTTATC
* *
157714 TTAATAAATCTCAGACACAAGGATTTGTTTTTATGAGCATCAGAATTTTGTTTCGATGTAATTAG
193 TTAATAAATCTCAGACACAAGGATTTGTTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAG
157779 AAATTAATTC-GAAAAAAATAGGAAAAACGATATTAGAAGAGTG-ATTCAATC
258 AAATTAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGAGTGAATTCAATC
* *
157830 TTTTTGTCTTTTAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
1 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
* * * *
157895 GGCCAAATTTATACAAAAATTTAGCCGAAATTGTATATTATC-CTTTTTTGCTAAAACAGCGTTC
66 GGTCAAATTT-TACGAAAATTTAGCCGAAATT-TATATTATCACTTTTTGGCTAAAAAAGCGTTC
* * *
157959 CGGGCCTCGGCTCAGTTTTGCATGATTTTTGTCACCAAGACTCCTTCAAATATATATATATATAT
129 CGGGCCTCGACTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATAT-T-TAT
** ** * ** * ** * *
158024 -TTATTTATTTATATATTCATCTTACTAAGTCTCCGGCACATTGGATTTA--A-CGTTTTGATTT
192 CTTA---A--TA-A-A-TC-TCAGAC--A--C-AAGG-A-TTTGTTTTTATGAGC-ATCAGAATC
** * ** * * * *
158085 TATGAGCATCAGAATCTT-GTTTCAATTTAATT-AGAAATTAATTCGGAAAAAAATGGAAAAACG
240 T-T--GTTTC-G-AT-TTAATTAGAAATTAATTCGGAAA-AAAAT----A------GGAAAAACG
158148 ATATTAGAAGAGTGAAAATCCCTTCAATC
288 ATATTAGAAGAGTG--AA----TTCAATC
*
158177 TTTTTGTCGTTGAATTATATATGTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
1 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
* * * * *
158242 GGTCAACTTTTGCGAAACTTTAGCCGAACTCGTATACTATCTATCACGGTTTTTGGCTAAAAACG
66 GGTCAAATTTTACGAAAATTTAGCCGAAAT--T-TA-TAT-TATCAC--TTTTTGGCTAAAAAAG
* * * * * * * * *
158307 TGTTTCGGGGCC-CCAGCTCAGTTTTGCATAAATTTTGACGCCAAGACTCCTTAAAATATCTATG
124 CG-TTCCGGGCCTCGA-CTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATA
* * * * *
158371 TTCATCTTACTAAATCTCAGAGACATTGCATTTAAGGATATATTTTTATGAGCATCAGAATCCTG
187 TTTATCTTAATAAATCTC--AGACA---C----AAGGATTTGTTTTTATGAGCATCAGAATCTTG
* *
158436 TTTCGATTTAATTAGAAATTTATTCGG-AAAAAATAGGAAATACGATATTAGAA-ACGTGAAAAT
243 TTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGA-GTG--AA-
158499 CCCTTCAATC
304 ---TTCAATC
* * *
158509 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATTTTGACCAAAAATTGAGGAAAAATATTTCG
1 TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
158574 GGTCAA
66 GGTCAA
158580 TTCTTGCAAA
Statistics
Matches: 1098, Mismatches: 175, Indels: 206
0.74 0.12 0.14
Matches are distributed among these distances:
302 28 0.03
303 41 0.04
304 19 0.02
305 2 0.00
306 1 0.00
309 131 0.12
310 30 0.03
311 5 0.00
313 1 0.00
315 2 0.00
316 3 0.00
317 4 0.00
318 78 0.07
319 8 0.01
320 20 0.02
321 62 0.06
322 4 0.00
323 54 0.05
324 43 0.04
325 10 0.01
326 8 0.01
327 17 0.02
328 105 0.10
329 52 0.05
330 14 0.01
331 1 0.00
332 103 0.09
334 1 0.00
338 1 0.00
340 23 0.02
342 5 0.00
343 14 0.01
344 5 0.00
345 6 0.01
346 24 0.02
347 80 0.07
348 13 0.01
349 4 0.00
350 4 0.00
351 1 0.00
352 2 0.00
353 19 0.02
354 50 0.05
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (310 bp):
TTTTTGTCGTTGAATTATATATCTTTTATGAGTATATTGGCCAAAAATTGAGGGAAAATATTTCG
GGTCAAATTTTACGAAAATTTAGCCGAAATTTATATTATCACTTTTTGGCTAAAAAAGCGTTCCG
GGCCTCGACTCAGTTTTGCATAATTTTTGGCACCAAGACTCCTTCAAATATATATATTTATCTTA
ATAAATCTCAGACACAAGGATTTGTTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAA
TTAATTCGGAAAAAAATAGGAAAAACGATATTAGAAGAGTGAATTCAATC
Found at i:158463 original size:332 final size:327
Alignment explanation
Indices: 156848--158922 Score: 1838
Period size: 332 Copynumber: 6.4 Consensus size: 327
156838 TTGTATCTAT
* * * * * *
156848 TATTAGAGGAGTGATAATCCCTTTAATGTTTTTGTTGTTGAATTATATATCTTTTATGAGTGTAT
1 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATAT-TTTTATGAGTATAT
*
156913 TGGCCAAAAATTGAGGGAAAATATTTCGGGTCAAGTTTTGCGAAAATTTAGCCGAAATCGTATAT
65 TGGCCAAAAATTGAGGGAAAATATTTCGGGTCAA-TTTTGCAAAAATTTAGCCGAAAT--TATA-
* * * * * * * *
156978 TAGCCGTCATGGTTTTTGGCTGAAAATGCG-TTCCGGGACCCGGCTCAGTTCTGCATAATTTTTG
126 TATCCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTG
* * * * * *
157042 ACGCCAAGACTCCTTCAAATATCTAAATTCATCCTAATAATTCTCAA-ACA---C----AAGGAT
191 GCGCCAAGACTCCTTAAAATATATATATTCATCTTAATAAATCTCAAGACATTGCATTTAAGGAT
* * * *
157099 ATT-TTTTTAATGGGCATCAGACTCTTGTTTCGATTTAATTAGAAATTAATTCGGAAGAAAATAA
256 -TTATTTTT-ATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAG
*
157163 GATAAACGA
319 GAAAAACGA
* ** *
157172 TATTAGAAGAGTGAAAATCCCATCAATCTTTTTGTCGTTGAATTATATATTTTTCATGAGCCTTT
1 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATTTTT-ATGAGTATAT
* * * * * *
157237 TGGCC-TAAATTGAGGAAAAATATTTCGGGTCAACTTTTGCGAAATTTTAGCTGCAAAATTTTAT
65 TGGCCAAAAATTGAGGGAAAATATTTCGGGTCAA-TTTTGCAAAAATTTAGC--CGAAATTATAT
* * * * * *
157301 -TCCATCACGG-TTTTGGTTAAAAACACGTTCCGGGGCCCCGACTTAGTTTTGCATGATTTTTGG
127 ATCCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTGG
* * * ** * *
157364 TGCCAAGACTCCTTTAAATATATATATTTATCTTCCTAAATCTCAAGCACATTGGATTTAATGAT
192 CGCCAAGACTCCTTAAAATATATATATTCATCTTAATAAATCTCAAG-ACATTGCATTTAAGGAT
* * *
157429 TTGTTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAA-TAAATCGGGAAAAAATAGGA
256 TTATTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGGA
*
157493 AAAACAA
321 AAAACGA
*
157500 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATCTTTATGAGTATATT
1 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATTTTTATGAGTATATT
* * * * * *
157565 AGTCAAAAATTGAGGTAAAATATTTCGGGTCAATTTCTACTAAAATTAAGCCG--A--A-A-AT-
66 GGCCAAAAATTGAGGGAAAATATTTCGGGTCAATTT-TGCAAAAATTTAGCCGAAATTATATATC
* * ** *
157623 --T-ACGGTTTTTGGCTAAAAACGCGTTTCAGGGCTCCAACTCAGTTTTGCATAATTTTTGGCAC
130 CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTGGCGC
* * * * *
157685 CAAGAGTCCTTCAAATATTTATATTTATCTTAATAAATCTC-AGACA---C----AAGGATTTGT
195 CAAGACTCCTTAAAATATATATATTCATCTTAATAAATCTCAAGACATTGCATTTAAGGATTTAT
* *
157742 TTTTATGAGCATCAGAATTTTGTTTCGATGTAATTAGAAATTAATTC-GAAAAAAATAGGAAAAA
260 TTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGGAAAAA
157806 CGA
325 CGA
* *
157809 TATTAGAAGAGTG---A----TTCAATCTTTTTGTCTTTTAATTATATATCTTTTATGAGTATAT
1 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATAT-TTTTATGAGTATAT
* * *
157867 TGGCCAAAAATTGAGGGAAAATATTTCGGGCCAAATTTATACAAAAATTTAGCCGAAATTGTATA
65 TGGCCAAAAATTGAGGGAAAATATTTCGGGTC-AATTT-TGCAAAAATTTAGCCGAAATTATATA
* * * * * *
157932 T-TATC-C--TTTTTTGCT-AAAACAGCG-TTCCGGGCCTCGGCTCAGTTTTGCATGATTTTTGT
128 TCCATCACGGTTTTTGGCTAAAAAC-GCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTGG
* *
157991 CACCAAGACTCCTTCAAATATATATATATAT-ATTTATTTATTTATATATTCATCTTACTAAGTC
192 CGCCAAGACTCCTT-AAA-ATATATATAT-TCA--T-CTTA---ATA-A---ATC-T-C-AA---
* * * *
158055 TCCGGCACATTGGATTTAACGTTTTGA-TTTTATGAGCATCAGAATCTTGTTTCAATTTAATTAG
238 ----G-ACATTGCATTTAAGGATTT-ATTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAG
158119 AAATTAATTCGGAAAAAAAT-GGAAAAACGA
297 AAATTAATTCGGAAAAAAATAGGAAAAACGA
158149 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATGTTTTATGAGTATAT
1 TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATAT-TTTTATGAGTATAT
* * *
158214 TGGCCAAAAATTGAGGGAAAATATTTCGGGTCAACTTTTGCGAAACTTTAGCCGAACTCGTATAC
65 TGGCCAAAAATTGAGGGAAAATATTTCGGGTCAA-TTTTGCAAAAATTTAGCCGAAAT--TATA-
* * * *
158279 TATCTATCACGGTTTTTGGCTAAAAACGTGTTTCGGGGCCCCAGCTCAGTTTTGCATAAATTTTG
126 TATCCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTG
* * * *
158344 ACGCCAAGACTCCTTAAAATATCTATGTTCATCTTACTAAATCTCAGAGACATTGCATTTAAGGA
191 GCGCCAAGACTCCTTAAAATATATATATTCATCTTAATAAATCTCA-AGACATTGCATTTAAGGA
* * *
158409 TATATTTTTATGAGCATCAGAATCCTGTTTCGATTTAATTAGAAATTTATTCGG-AAAAAATAGG
255 TTTATTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGG
*
158473 AAATACGA
320 AAAAACGA
*
158481 TATTAGAA-ACGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATCTTTTATGAGTATT
1 TATTAGAAGA-GTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATAT-TTTTATGAGTATA
* * * ** *
158545 TTGACCAAAAATTGAGGAAAAATATTTCGGGTCAATTCTTGCAAAATTTTAGTTGAAATCGTGTC
64 TTGGCCAAAAATTGAGGGAAAATATTTCGGGTCAATT-TTGCAAAAATTTAGCCGAAAT--TAT-
* * * * * * * *
158610 CTATCCATCACGGTTTTTGGCTAGAAACGC-ATTCAGGGGCTCTGGCTAATTTTTGCATGATTTT
125 ATATCCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGCCCCGGCTCAGTTTTGCATAATTTT
* * * * * *
158674 TGGCGCCAAGACTCATT-GAA-AGATATATTCATC-TAATCAAATCTCAACCACATTGGACTTAA
189 TGGCGCCAAGACTCCTTAAAATATATATATTCATCTTAAT-AAATCTCAA-GACATTGCATTTAA
* * * * * * * *
158736 GGATTTATTTTTACGGGCACCAGAAAC------CAATATAATTAGAGATTAATTCGG-AAAGAAT
252 GGATTTATTTTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAT
158794 A-GAAAAA--A
317 AGGAAAAACGA
* * * * *
158802 AAATAGAAGCGTGAAACA-CCCTTCAATCTTTTTG-GGTTGAATTATATACTTTTTATGAGTATT
1 TATTAGAAGAGTGAAA-ATCCCTTCAATCTTTTTGTCGTTGAATTATATA-TTTTTATGAGTATA
** * * *
158865 TTGTTCAAAAATTGA-GGAAAAAACTTTCGGGTCAATTTTTGTAAAATTTTAGCCGAAA
64 TTGGCCAAAAATTGAGGGAAAATA-TTTCGGGTCAA-TTTTGCAAAAATTTAGCCGAAA
158923 ACACTTAGAG
Statistics
Matches: 1454, Mismatches: 200, Indels: 198
0.79 0.11 0.11
Matches are distributed among these distances:
302 27 0.02
303 41 0.03
304 19 0.01
306 2 0.00
309 125 0.09
310 20 0.01
311 10 0.01
312 3 0.00
313 1 0.00
314 3 0.00
316 3 0.00
317 9 0.01
318 84 0.06
319 6 0.00
320 80 0.06
321 108 0.07
322 3 0.00
323 58 0.04
324 84 0.06
325 6 0.00
326 1 0.00
327 13 0.01
328 109 0.07
329 40 0.03
330 61 0.04
331 16 0.01
332 247 0.17
333 4 0.00
339 1 0.00
340 75 0.05
341 10 0.01
342 3 0.00
343 1 0.00
345 1 0.00
346 20 0.01
347 75 0.05
348 3 0.00
349 6 0.00
350 5 0.00
351 2 0.00
352 9 0.01
353 13 0.01
354 47 0.03
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (327 bp):
TATTAGAAGAGTGAAAATCCCTTCAATCTTTTTGTCGTTGAATTATATATTTTTATGAGTATATT
GGCCAAAAATTGAGGGAAAATATTTCGGGTCAATTTTGCAAAAATTTAGCCGAAATTATATATCC
ATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATAATTTTTGGCGCC
AAGACTCCTTAAAATATATATATTCATCTTAATAAATCTCAAGACATTGCATTTAAGGATTTATT
TTTATGAGCATCAGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGGAAAAAC
GA
Done.