Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015392.1 Corchorus olitorius cultivar O-4 contig15425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128415

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--401
52
7.7
52
98
0
775
25
27
14
32
1.95
1728--1773
23
2.0
23
100
0
92
26
43
4
26
1.73
2744--2776
2
16.5
2
93
0
57
51
45
0
3
1.16
5064--5100
2
18.5
2
100
0
74
51
0
48
0
1.00
5949--5984
2
18.5
2
88
5
56
52
2
0
44
1.15
9138--9176
20
2.0
20
100
0
78
38
25
20
15
1.92
18964--19052
31
2.9
31
81
6
85
35
24
5
33
1.79
27672--27706
9
3.8
9
88
7
52
8
91
0
0
0.42
27669--27706
10
3.8
10
85
0
58
10
89
0
0
0.49
27673--27707
18
1.9
18
94
0
61
11
88
0
0
0.51
29651--29676
3
8.7
3
100
0
52
69
0
30
0
0.89
37901--37932
5
6.2
5
96
3
55
3
18
0
78
0.89
38185--38227
21
2.1
21
91
4
70
0
23
0
76
0.78
44850--44883
17
2.1
17
94
5
61
85
0
2
11
0.71
50555--50597
14
3.0
14
96
3
77
16
20
0
62
1.32
61992--62047
21
2.8
20
83
5
78
28
21
14
35
1.92
67856--67886
15
2.0
16
93
6
55
45
0
51
3
1.17
70961--70985
2
12.5
2
100
0
50
52
48
0
0
1.00
74593--75071
235
2.0
235
99
0
949
28
17
18
35
1.94
101349--101407
30
2.0
30
89
0
91
40
1
25
32
1.66
101633--101662
15
2.0
15
100
0
60
26
13
6
53
1.64
106193--106227
15
2.3
15
100
0
70
34
5
20
40
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107488--107518
14
2.2
14
94
0
53
0
16
0
83
0.64
112987--113070
42
2.0
42
97
0
159
29
17
14
38
1.90
115627--115675
3
16.3
3
100
0
98
67
0
0
32
0.91
126184--126215
4
8.0
4
92
0
55
0
46
0
53
1.00

Tables:   1

The End!