Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015396.1 Corchorus olitorius cultivar O-4 contig15429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24873
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:1331 original size:331 final size:331
Alignment explanation
Indices: 383--1764 Score: 1339
Period size: 329 Copynumber: 4.2 Consensus size: 331
373 CCGAGACTTA
* * * * * **** **
383 TTGAAATAACTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTACAAAATA
1 TTGAAATATCCATAATCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGT-TTTTACG
* * ** * *
448 AGCATCTGAATCATGTTTCGCTTTAACAAGAAATTAATTCAGAAAATAATAGGAGAAACGATATT
65 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAA-AATATGACAAACGATATT
* * * * * * * * *
513 AGAAGCATGAAAAACCCTTCAATCTTTTTGGCGTCGAATTATATA-ATTTTTATTAGTATTGTGG
128 AAAAGCGTGAAAAATCCTTCAACCTTTTTGGCGTCAAATTATATATA-TTTCATGAGTATTTTAG
* * * * * * * *
577 CTAAAAATTGAAGAAATAACTTTCAGGTCAATTATCGCAAAA-TTAAGCCGAAATCGTGTAATAA
192 CCAAAAATTGATGAAATATCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAA
* * **
641 TCAT--CA-----TGGCTAAAAACGTGTTTCAGGGCCCCGGGTCAGTTTTGCATGATTTTTGGCG
257 CCATCACAGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTGGCG
699 CCAAGACTCC
322 CCAAGACTCC
* * * * *
709 TTGAGATATCCATATTCATCTGATCAAATCTCAGCCACATTACACTTAAGGATTTGTTTTTACGA
1 TTGAAATATCCATAATCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTACGA
* * * * *
774 GCATCTGAATCTTGTTCTCCACTTAATTATAAATTAATTCAGAAAAATTATGAAAAAACGATATG
66 GCATCTGAATCTTGTT-TCGATTTAATTAGAAATTAATTCAGAAAAA-TATG-ACAAACGATATT
* * * *
839 AAAAGCGTGAAAAGTCCTCCAACCTTTTCGGCGTTAAATTATATATATTTCATGAGTATTTTAGC
128 AAAAGCGTGAAAAATCCTTCAACCTTTTTGGCGTCAAATTATATATATTTCATGAGTATTTTAGC
* * *
904 CAAAAATTGAGGTGAAAT-T-TTTCGGGTAATTTTTTAG-AAAATTTTGGCCGAAATCGTGTACT
193 CAAAAATTGA--TGAAATATCTTTCGGGTAAATTTTT-GCAAAATTTTAGCCGAAATCGTGTAAT
* **
966 AACCATCACAGTTTTTGGCTAAAAATGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTTA
255 AACCATCACAGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTGG
* * *
1031 AGCCGAGAGTCC
320 CGCCAAGACTCC
** * * *
1043 TTGAAATATTTATAACCATCTAATCATATCTC-GACCATATTGCATTTAAGGATTTGTTTTTACG
1 TTGAAATATCCATAATCATCTAATCAAATCTCAG-CCACATTGCATTTAAGGATTTGTTTTTACG
* *
1107 AGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAGTATGA-AAACCGATATT
65 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAA-TATGACAAA-CGATATT
* * *** * ** * * * *
1171 AGAATCGT-AAAAATCCTTCATTATTTTTGGTGTTGAATTATATATTTTTTAGGAGTATTTTAGA
128 AAAAGCGTGAAAAATCCTTCAACCTTTTTGGCGTCAAATTATATATATTTCATGAGTATTTTAGC
* * * ** * *
1235 AAAAAATTGATGAAATATCTTTCGGGAAAATTTTTGCAAAATGTTAGCCGAAATAATATAATAAT
193 CAAAAATTGATGAAATATCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAAC
* * * *
1300 CATCACAGTTTTTAGCTAAAAACGCGTTTCAGGG-CCCGAGTTAGTTTTGCATAATTTTTGGCGC
258 CATCACAGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGC
*
1364 CAATACTCC
323 CAAGACTCC
* * *
1373 TT-AAGATATCCAT-ATCATCTGATCAAATCTCATCCATATTGCATTTAAGGATTTGTTTTTACG
1 TTGAA-ATATCCATAATCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTACG
* ** *
1436 AGCATCTGAATCTTCTTTCGATTTAATTATG-AATTAATTCAGATTAATATGACAGAACGATATA
65 AGCATCTGAATCTTGTTTCGATTTAATTA-GAAATTAATTCAGAAAAATATGACA-AACGATATT
* *
1500 AAAAGCGTGAAAAGTCCTTCAACCTTTTTGACGTCAAATTATATATATTTCATGAGTATTTTAG-
128 AAAAGCGTGAAAAATCCTTCAACCTTTTTGGCGTCAAATTATATATATTTCATGAGTATTTTAGC
* * * * * * * *
1564 CTAAAATTGAGGAAAAATTTTTCGGGTAATTTTTTGCATAATTTTAACCGAAATCGTGTACTAAC
193 CAAAAATTGATGAAATATCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAAC
** * * * * * *
1629 CATCACAGTTTTTTTCTAAAAACACGTTTCGGGGCCCCGGCTCAATTTTCCAT-ATTTTTTTGCG
258 CATCACAGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCGACTCAGTTTTGCATGA-TTTTTGGCG
* * * *
1693 TCGATATTCC
322 CCAAGACTCC
* * * *
1703 GTAAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTA
1 TTGAAATATCCATAATCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTA
1765 ATTCAGAAAA
Statistics
Matches: 857, Mismatches: 169, Indels: 55
0.79 0.16 0.05
Matches are distributed among these distances:
324 2 0.00
325 23 0.03
326 152 0.18
327 24 0.03
328 10 0.01
329 189 0.22
330 123 0.14
331 169 0.20
332 13 0.02
333 31 0.04
334 121 0.14
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (331 bp):
TTGAAATATCCATAATCATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTACGA
GCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGACAAACGATATTAAA
AGCGTGAAAAATCCTTCAACCTTTTTGGCGTCAAATTATATATATTTCATGAGTATTTTAGCCAA
AAATTGATGAAATATCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCAT
CACAGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGCCAA
GACTCC
Found at i:1650 original size:660 final size:658
Alignment explanation
Indices: 399--1764 Score: 1719
Period size: 660 Copynumber: 2.1 Consensus size: 658
389 TAACTATATT
* * **** ** *
399 CATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTACAAAATAAGCATCTGAATCATGT
1 CATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGT-TTTTACGAGCATCTAAATCATGT
*
464 TTCGCTTTAACAAGAAATTAATTCAGAAAATAATAGGAGAAACGATATTAGAAGCATGAAAAACC
65 TTCGATTTAACAAGAAATTAATTCAGAAAATAATAGGAGAAACGATATTAGAAGCATGAAAAACC
* ** * **
529 CTTCAATCTTTTTGGCGTCGAATTATATAATTTTTATTAGTATTGTGGCTAAAAATTGAAGAAAT
130 CTTCAATATTTTTGGCGTCGAATTATATAATTTTTAGGAGTATTGTAGAAAAAAATTGAAGAAAT
** ** * *
594 AACTTTCAGGTCAATTATCGCAAAATTAAGCCGAAATCGTGTAATAATCATCATGGCTAAAAACG
195 AACTTTCAGGAAAATTATCGCAAAATTAAGCCGAAATAATATAATAATCATCATAGCTAAAAACG
* * * *
659 TGTTTCAGGGCCCCGGGTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAGATATCCATAT
260 CGTTTCAGGGCCCCGAGTCAGTTTTGCATAATTTTTGGCGCCAAGACTCCTTAAGATATCCATAT
*
724 TCATCTGATCAAATCTCAGCCACATTACACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
325 TCATCTGATCAAATCTCAGCCACATTACACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCT
*
789 TCTCCACTTAATTATAAATTAATTCAGAAAAATTATGAAAAAACGATATGAAAAGCGTGAAAAGT
390 TCTCCACTTAATTATAAATTAATTCAGAAAAATTATGAAAAAACGATATAAAAAGCGTGAAAAGT
* * **
854 CCTCCAACCTTTTCGGCGTTAAATTATATATATTTCATGAGTATTTTAGCCAAAAATTGAGGTGA
455 CCTCCAACCTTTTCGACGTCAAATTATATATATTTCATGAGTATTTTAGCCAAAAATTGAGGAAA
**
919 AATTTTTCGGGTAATTTTTTAGAAAATTTTGGCCGAAATCGTGTACTAACCATCACAGTTTTTGG
520 AATTTTTCGGGTAATTTTTTAGAAAATTTTAACCGAAATCGTGTACTAACCATCACAGTTTTTGG
** * * * *
984 CTAAAAATGCGTTTCAGGGCCCCGACTCAGTTTTGCATGATTTTTTAAGC-CGAGAGTCCTTGAA
585 CTAAAAACACGTTTCAGGGCCCCGACTCAATTTTCCAT-ATTTTTT-AGCGCGAGAGTCCGTAAA
*
1048 ATATTTATAAC
648 ATATCTATAAC
* * *
1059 CATCTAATCATATCTC-GACCATATTGCATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGT
1 CATCTAATCAAATCTCAG-CCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTAAATCATGT
** * * * * * *
1123 TTCGATTTAATTAGAAATTAATTCGGAAAA-AGTATGA-AAACCGATATTAGAATCGT-AAAAAT
65 TTCGATTTAACAAGAAATTAATTCAGAAAATAATAGGAGAAA-CGATATTAGAAGCATGAAAAAC
* * * * * *
1185 CCTTCATTATTTTTGGTGTTGAATTATATATTTTTTAGGAGTATTTTAGAAAAAAATTGATGAAA
129 CCTTCAATATTTTTGGCGTCGAATTATATAATTTTTAGGAGTATTGTAGAAAAAAATTGAAGAAA
* * * * *
1250 TATCTTTCGGGAAAATTTTTGCAAAATGTTAGCCGAAATAATATAATAATCATCACAGTTTTTAG
194 TAACTTTCAGGAAAATTATCGCAAAAT-TAAGCCGAAATAATATAATAATCAT--CA-----TAG
* *
1315 CTAAAAACGCGTTTCAGGG-CCCGAGTTAGTTTTGCATAATTTTTGGCGCCAATACTCCTTAAGA
251 CTAAAAACGCGTTTCAGGGCCCCGAGTCAGTTTTGCATAATTTTTGGCGCCAAGACTCCTTAAGA
* * * *
1379 TATCCATA-TCATCTGATCAAATCTCATCCATATTGCATTTAAGGATTTGTTTTTACGAGCATCT
316 TATCCATATTCATCTGATCAAATCTCAGCCACATTACACTTAAGGATTTGTTTTTACGAGCATCT
* * * ** * *
1443 GAATCTTCTT-TCGATTTAATTATGAATTAATTCAGATTAA-TATGACAGAACGATATAAAAAGC
381 GAATCTTCTTCTCCACTTAATTATAAATTAATTCAGAAAAATTATGAAAAAACGATATAAAAAGC
* * *
1506 GTGAAAAGTCCTTCAACCTTTTTGACGTCAAATTATATATATTTCATGAGTATTTTAG-CTAAAA
446 GTGAAAAGTCCTCCAACCTTTTCGACGTCAAATTATATATATTTCATGAGTATTTTAGCCAAAAA
*
1570 TTGAGGAAAAATTTTTCGGGTAATTTTTT-GCATAATTTTAACCGAAATCGTGTACTAACCATCA
511 TTGAGGAAAAATTTTTCGGGTAATTTTTTAG-AAAATTTTAACCGAAATCGTGTACTAACCATCA
** * * * *
1634 CAGTTTTTTTCTAAAAACACGTTTCGGGGCCCCGGCTCAATTTTCCATATTTTTTTGCGTCGATA
575 CAGTTTTTGGCTAAAAACACGTTTCAGGGCCCCGACTCAATTTTCCATATTTTTTAGCG-CGAGA
* **
1699 TTCCGTAAAATATCTATATT
639 GTCCGTAAAATATCTATAAC
1719 CATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTA
1 CATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTA
1765 ATTCAGAAAA
Statistics
Matches: 601, Mismatches: 91, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
657 82 0.14
658 41 0.07
659 50 0.08
660 199 0.33
661 75 0.12
662 25 0.04
663 61 0.10
664 48 0.08
665 20 0.03
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (658 bp):
CATCTAATCAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTAAATCATGTT
TCGATTTAACAAGAAATTAATTCAGAAAATAATAGGAGAAACGATATTAGAAGCATGAAAAACCC
TTCAATATTTTTGGCGTCGAATTATATAATTTTTAGGAGTATTGTAGAAAAAAATTGAAGAAATA
ACTTTCAGGAAAATTATCGCAAAATTAAGCCGAAATAATATAATAATCATCATAGCTAAAAACGC
GTTTCAGGGCCCCGAGTCAGTTTTGCATAATTTTTGGCGCCAAGACTCCTTAAGATATCCATATT
CATCTGATCAAATCTCAGCCACATTACACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTT
CTCCACTTAATTATAAATTAATTCAGAAAAATTATGAAAAAACGATATAAAAAGCGTGAAAAGTC
CTCCAACCTTTTCGACGTCAAATTATATATATTTCATGAGTATTTTAGCCAAAAATTGAGGAAAA
ATTTTTCGGGTAATTTTTTAGAAAATTTTAACCGAAATCGTGTACTAACCATCACAGTTTTTGGC
TAAAAACACGTTTCAGGGCCCCGACTCAATTTTCCATATTTTTTAGCGCGAGAGTCCGTAAAATA
TCTATAAC
Found at i:2741 original size:244 final size:236
Alignment explanation
Indices: 2252--2702 Score: 550
Period size: 244 Copynumber: 1.9 Consensus size: 236
2242 AATCATCACG
* *
2252 ATTTTTTGCTAAAAACGCATTCCGGGGTCCCGGCTAAGTTTTGCATGATTTTTTGCTCCAAGACT
1 ATTTTTTGCTAAAAACGCATTCCGCGGTCCCGGCTAAGTTTTGCATGATTTTTTGCTCCAAAACT
* * * * * * *
2317 CTTTGAGATATCCATATTCATCTAATCAATTCTCAGATACATTGAATTTAAGATTTTTTTATGAG
66 CCTTAAGATATCCATATTCATCAAACCAAATCTCAGACACATTGAATTTAAGATTTTTTTACGAG
*
2382 AATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACAATATCATAA
131 AATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATAGGAAAAAC-ATATCATAA
* ** * *
2447 GAAAAGTGTGAAAAGTCCTCCAATCATTGTTTTTTTTCTTTTCT
195 G-AAAGCGTGAAAAGTCCTCCAAT-ATTGTTTTTTTAATTGTAT
* * * *
2491 -TTTTTTGCTAAAAACGCGTTCCGCGGTCCCGGGTTAGTTTTGCATGATTTTTTGACTCGAAAAC
1 ATTTTTTGCTAAAAACGCATTCCGCGGTCCCGGCTAAGTTTTGCATGATTTTTTG-CTCCAAAAC
* * * *
2555 TCCTTAACTTATATCTATATTCATCAAACCAAATCTCAGCCACATTGTATTTAAGGATTTGTTTT
65 TCCTTAA--GATATCCATATTCATCAAACCAAATCTCAGACACATTGAATTTAA-GA-TT-TTTT
2620 TACGAGAATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTTGAGAATAAAATAGGAAAAAC-
125 TACGAGAATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTT-AG-A-AAAATAGGAAAAACA
*
2684 TAT-ATTAG-AAGCGTGAAAA
187 TATCATAAGAAAGCGTGAAAA
2703 AGCTTTCAAT
Statistics
Matches: 183, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
238 50 0.27
239 12 0.07
241 37 0.20
242 12 0.07
243 2 0.01
244 51 0.28
245 5 0.03
246 1 0.01
247 13 0.07
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (236 bp):
ATTTTTTGCTAAAAACGCATTCCGCGGTCCCGGCTAAGTTTTGCATGATTTTTTGCTCCAAAACT
CCTTAAGATATCCATATTCATCAAACCAAATCTCAGACACATTGAATTTAAGATTTTTTTACGAG
AATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATAGGAAAAACATATCATAAG
AAAGCGTGAAAAGTCCTCCAATATTGTTTTTTTAATTGTAT
Found at i:17109 original size:2 final size:2
Alignment explanation
Indices: 17097--17127 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
17087 TGTCATGTCT
17097 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17128 CTTAAATGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17401 original size:78 final size:78
Alignment explanation
Indices: 17272--17427 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
17262 GCATTGGCTT
* *
17272 CACGGTAAATATGTTTGATAGAACACCTTCAAAGTTTTGCAAGGAGTTTCTTCATTGCATCCAAT
1 CACGGTAAATATGTTTGATAGAACACCTCCAAAGTTTTACAAGGAGTTTCTTCATTGCATCCAAT
17337 AGTTTAGAATGAG
66 AGTTTAGAATGAG
* *
17350 CACGGTAAATATGTTTGATAGAACACCTCCAAGGTTTTACAAGGAGTTTCTTTATTGCATCCAAT
1 CACGGTAAATATGTTTGATAGAACACCTCCAAAGTTTTACAAGGAGTTTCTTCATTGCATCCAAT
17415 AGTTTAGAATGAG
66 AGTTTAGAATGAG
17428 GCCCGGACAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (78 bp):
CACGGTAAATATGTTTGATAGAACACCTCCAAAGTTTTACAAGGAGTTTCTTCATTGCATCCAAT
AGTTTAGAATGAG
Found at i:17814 original size:30 final size:30
Alignment explanation
Indices: 17752--17820 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
17742 AAATTTGCAA
*
17752 ATTGACCCCACTTAAAAGAAAATTTTATGAT
1 ATTGACCCCAC-TAAAAGAAAATTTTAGGAT
* *
17783 ATTGACCCCA-TAAATTGAAAGTTTTAGGAT
1 ATTGACCCCACTAAA-AGAAAATTTTAGGAT
17813 ATTGACCC
1 ATTGACCC
17821 ACTGTAAGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 4 0.12
30 20 0.59
31 10 0.29
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (30 bp):
ATTGACCCCACTAAAAGAAAATTTTAGGAT
Found at i:18679 original size:24 final size:24
Alignment explanation
Indices: 18652--18704 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
18642 ACCAATGAAA
*
18652 CATTTATGAAACAGAATCAATAAG
1 CATTTATGAAACAAAATCAATAAG
18676 CA-TTATGAAACAAAATCAATAAG
1 CATTTATGAAACAAAATCAATAAG
*
18699 CTTTTA
1 CATTTA
18705 AGAGGTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.28
Consensus pattern (24 bp):
CATTTATGAAACAAAATCAATAAG
Found at i:21458 original size:43 final size:39
Alignment explanation
Indices: 21356--21480 Score: 178
Period size: 39 Copynumber: 3.1 Consensus size: 39
21346 TATTTATAAC
*
21356 TAGGGGCTAAACCTGGATTTAATTTATTACCTTAATTAT
1 TAGGGGCTAAACCTGAATTTAATTTATTACCTTAATTAT
*
21395 TAGGGGCTAAACCTGAATTTAATTTATTGCCTTTATTATTAT
1 TAGGGGCTAAACCTGAATTTAATTTATTACC-TTA--ATTAT
* *
21437 TAGGGGGCTAAACCTGAATTTAATTTATTTCCTAAATTAT
1 TA-GGGGCTAAACCTGAATTTAATTTATTACCTTAATTAT
21477 TAGG
1 TAGG
21481 AGAGTCAAGT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
39 31 0.40
40 10 0.13
42 9 0.12
43 28 0.36
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (39 bp):
TAGGGGCTAAACCTGAATTTAATTTATTACCTTAATTAT
Done.