Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015397.1 Corchorus olitorius cultivar O-4 contig15430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50132

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
723--763
2
20.5
2
100
0
82
48
0
0
51
1.00
1218--1279
30
2.1
30
84
6
81
35
11
27
25
1.90
1654--1693
22
1.9
21
85
10
55
42
2
12
42
1.56
2824--2861
11
3.5
11
85
10
51
57
2
0
39
1.12
4049--5003
331
2.9
323
78
8
1012
36
17
14
32
1.90
4900--5162
144
1.8
145
80
4
325
37
17
17
27
1.93
4242--5823
803
2.0
802
82
4
1958
36
16
15
31
1.90
5045--7305
661
3.4
657
85
4
2937
35
16
15
32
1.90
5051--7274
330
6.7
328
80
4
2285
35
16
15
32
1.90
7057--7525
261
1.8
260
84
2
654
36
16
15
31
1.90
6724--7877
595
2.0
586
84
4
1539
35
16
16
32
1.90
7306--10165
334
8.7
324
70
15
1272
35
16
15
31
1.91
8493--9027
287
1.9
287
87
2
788
36
14
15
33
1.88
8781--9423
338
1.9
339
83
4
825
34
16
16
32
1.91
10275--10392
27
4.4
27
66
20
68
50
2
7
38
1.44
21865--21920
26
2.3
25
85
11
80
35
1
5
57
1.32
26284--26310
14
1.9
14
100
0
54
48
0
7
44
1.31
38888--39213
108
3.0
108
90
0
490
32
15
15
37
1.88
41723--41883
31
5.2
31
87
0
187
18
23
24
32
1.97
46569--46602
15
2.3
15
90
5
52
88
0
11
0
0.52
46569--46602
7
4.7
7
92
3
50
88
0
11
0
0.52

Tables:   1

The End!