Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000154.1 Corchorus olitorius cultivar O-4 contig00154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:355 original size:29 final size:31

Alignment explanation


    Indices: 299--374  Score: 102
    Period size: 29  Copynumber: 2.5  Consensus size: 31

        289 TACCGTACAA

                                           
        299 GTCCCTCTACTTACAAAAAAGGATCAATTTG
          1 GTCCCTCTACTTACAAAAAAGGATCAATTTG

                 *             **         *
        330 GTCCCCCTAC-TACAAAAACTG-TCAATTTT
          1 GTCCCTCTACTTACAAAAAAGGATCAATTTG

                            
        359 GTCCCTCTACTTACAA
          1 GTCCCTCTACTTACAA

        375 TTTGGTGTCA


Statistics
Matches: 39,  Mismatches: 5, Indels: 3
        0.83            0.11        0.06

Matches are distributed among these distances:
  29   16  0.41
  30   14  0.36
  31    9  0.23

ACGTcount: A:0.32, C:0.29, G:0.09, T:0.30


Consensus pattern (31 bp):   
GTCCCTCTACTTACAAAAAAGGATCAATTTG
Done.