Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015402.1 Corchorus olitorius cultivar O-4 contig15435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56656

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3008
330
9.3
327
75
10
2150
34
16
14
33
1.90
1--3002
647
4.6
643
74
12
1866
34
16
14
33
1.90
4846--5249
20
19.8
20
73
6
263
29
26
6
37
1.82
4846--5264
41
10.2
41
95
0
662
29
26
6
37
1.82
5331--5575
124
2.0
121
87
2
355
42
19
22
15
1.88
5687--5719
4
8.5
4
93
6
59
75
0
24
0
0.80
44016--44103
43
2.0
43
100
0
176
39
23
9
27
1.85
44029--44099
23
3.2
23
62
18
60
42
21
9
26
1.84
49370--49414
24
2.0
23
87
12
67
55
17
0
26
1.42
54538--54562
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!