Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015403.1 Corchorus olitorius cultivar O-4 contig15436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 179495
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:5150 original size:18 final size:18
Alignment explanation
Indices: 5127--5163 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
5117 CAATTAGATT
5127 AAACCATGTTAAGTGTTC
1 AAACCATGTTAAGTGTTC
5145 AAACCATGTTAAGTGTTC
1 AAACCATGTTAAGTGTTC
5163 A
1 A
5164 TTGACCCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (18 bp):
AAACCATGTTAAGTGTTC
Found at i:9064 original size:3 final size:3
Alignment explanation
Indices: 9056--9102 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
9046 CCTGGAGGTA
*
9056 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GAG GTG GT
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT
9103 TCAAGAAGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.02, C:0.00, G:0.66, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:9668 original size:57 final size:58
Alignment explanation
Indices: 9563--9703 Score: 162
Period size: 57 Copynumber: 2.5 Consensus size: 58
9553 AGTCCTTACC
* * ** *
9563 GAAGAGAGAGGGGAAGCCCTGATTATGGCCGTGGTTCTAGTCGTAGTCCTTATAATAG
1 GAAGAGAGAGGGCAAGCCCTGATTATGGCCGTGGTCCTAGTCCAAGTCCCTATAATAG
*
9621 GAAG-GAGAGGGCAAGCCCTGATTATGGCCGTGG-CCGTAGTCCAAGTCCCTATAAGA-
1 GAAGAGAGAGGGCAAGCCCTGATTATGGCCGTGGTCC-TAGTCCAAGTCCCTATAATAG
* * * *
9677 GAGGAGATAGAGCAAGCCCTGAATATG
1 GAAGAGAGAGGGCAAGCCCTGATTATG
9704 CCAGGGCCAC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
56 4 0.06
57 63 0.89
58 4 0.06
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (58 bp):
GAAGAGAGAGGGCAAGCCCTGATTATGGCCGTGGTCCTAGTCCAAGTCCCTATAATAG
Found at i:14834 original size:29 final size:29
Alignment explanation
Indices: 14786--14841 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
14776 TTAGGTTGAG
*
14786 GGGATAAAATGTCCTAAAATTGAAGTTTA
1 GGGATAAAATGTCCTAAAATTAAAGTTTA
14815 GGGAGTAAAATGTCC-AAAATTAAAGTT
1 GGGA-TAAAATGTCCTAAAATTAAAGTT
14842 CATGGGACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (29 bp):
GGGATAAAATGTCCTAAAATTAAAGTTTA
Found at i:14853 original size:29 final size:29
Alignment explanation
Indices: 14786--14853 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
14776 TTAGGTTGAG
* *
14786 GGGATAAAATGTCCTAAAATTGAAGTTTA
1 GGGATAAAATGTCCTAAAATTAAAGTTCA
14815 GGGAGTAAAATGTCC-AAAATTAAAGTTCA
1 GGGA-TAAAATGTCCTAAAATTAAAGTTCA
*
14844 TGGGACAAAA
1 -GGGATAAAA
14854 CGTTCAAACG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 20 0.59
30 14 0.41
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.25
Consensus pattern (29 bp):
GGGATAAAATGTCCTAAAATTAAAGTTCA
Found at i:19263 original size:14 final size:14
Alignment explanation
Indices: 19244--19290 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
19234 CAAACCCAAA
19244 TCTCTCTCTATTTC
1 TCTCTCTCTATTTC
*
19258 TCTCTCTCTCTTTC
1 TCTCTCTCTATTTC
*
19272 T-TCCTCTCTGTTTC
1 TCT-CTCTCTATTTC
19286 TCTCT
1 TCTCT
19291 GTTTTCCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.02, C:0.38, G:0.02, T:0.57
Consensus pattern (14 bp):
TCTCTCTCTATTTC
Found at i:19279 original size:20 final size:20
Alignment explanation
Indices: 19256--19307 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
19246 TCTCTCTATT
19256 TCTCTCTCTCTCT-TTCTTCC
1 TCTCTCTCTCTCTGTT-TTCC
*
19276 TCTCTGTTTCTCTCTGTTTTCC
1 TCTC--TCTCTCTCTGTTTTCC
*
19298 TCTGTCTCTC
1 TCTCTCTCTC
19308 AAAGCATTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 9 0.35
22 15 0.58
23 2 0.08
ACGTcount: A:0.00, C:0.38, G:0.06, T:0.56
Consensus pattern (20 bp):
TCTCTCTCTCTCTGTTTTCC
Found at i:22240 original size:17 final size:17
Alignment explanation
Indices: 22190--22241 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 17
22180 CCCTAATTAA
22190 TAATTAAAGTAAAAATT
1 TAATTAAAGTAAAAATT
*
22207 T-CTTATAA--AAAAA--
1 TAATTA-AAGTAAAAATT
22220 TAATTAAAGTAAAAATT
1 TAATTAAAGTAAAAATT
22237 TAATT
1 TAATT
22242 CTAAGTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
13 3 0.11
14 3 0.11
15 10 0.37
16 3 0.11
17 8 0.30
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
TAATTAAAGTAAAAATT
Found at i:23998 original size:83 final size:81
Alignment explanation
Indices: 23785--24018 Score: 369
Period size: 81 Copynumber: 2.9 Consensus size: 81
23775 TGGTTCTACA
* * *
23785 ATCAACGATTATCAGTTAGACAATATCAGTGTTTTGTCATTAATTATTATTCTTTAATGAGTTAA
1 ATCAACTATTATCAATTAGACAATATCAGTGTTTTGTCATTAATTATTATTCCTTAATGAGTTAA
*
23850 CTCCTAACATGGTACT
66 CTCCTAACATCGTACT
*
23866 ATCAACTATTATCAATTAGACAATATCAGTATTTTGTCATTAATTATTATTCCTTAATGAGTTAA
1 ATCAACTATTATCAATTAGACAATATCAGTGTTTTGTCATTAATTATTATTCCTTAATGAGTTAA
*
23931 CTCCTAATATCGTACT
66 CTCCTAACATCGTACT
** *
23947 ATCAACTATATTATCAATTAGACAATATTTGTGTTTTGCCATTAATTATTATTCCTTAATGAGTT
1 ATCAAC--TATTATCAATTAGACAATATCAGTGTTTTGTCATTAATTATTATTCCTTAATGAGTT
24012 AACTCCT
64 AACTCCT
24019 CCTTTCAAGG
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 81 0.57
83 60 0.43
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.42
Consensus pattern (81 bp):
ATCAACTATTATCAATTAGACAATATCAGTGTTTTGTCATTAATTATTATTCCTTAATGAGTTAA
CTCCTAACATCGTACT
Found at i:24078 original size:18 final size:18
Alignment explanation
Indices: 24055--24096 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
24045 AAAACAACAA
24055 TATTACAATAATTATTAT
1 TATTACAATAATTATTAT
24073 TATTACAATAATTATTAT
1 TATTACAATAATTATTAT
24091 TATTAC
1 TATTAC
24097 TATTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTACAATAATTATTAT
Found at i:26562 original size:2 final size:2
Alignment explanation
Indices: 26555--26581 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26545 CATGATTAAT
26555 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26582 TTTTCCCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27429 original size:16 final size:17
Alignment explanation
Indices: 27397--27441 Score: 74
Period size: 16 Copynumber: 2.7 Consensus size: 17
27387 AATATTGAAT
27397 ACCCGAACCCGAAAATG
1 ACCCGAACCCGAAAATG
*
27414 ACCCAAACCC-AAAATG
1 ACCCGAACCCGAAAATG
27430 ACCCGAACCCGA
1 ACCCGAACCCGA
27442 TCAACCCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.42, C:0.40, G:0.13, T:0.04
Consensus pattern (17 bp):
ACCCGAACCCGAAAATG
Found at i:29031 original size:15 final size:15
Alignment explanation
Indices: 28977--29033 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
28967 TCCGAACCGT
*
28977 ATGACCCGAAACCGAAA
1 ATGACCCG-AACC-CAA
*
28994 ACGACCC-AACCCAGA
1 ATGACCCGAACCCA-A
29009 ATTGACCCGAACCCAA
1 A-TGACCCGAACCCAA
29025 ATGACCCGA
1 ATGACCCGA
29034 CATTTGAACG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 1 0.03
15 14 0.41
16 7 0.21
17 12 0.35
ACGTcount: A:0.40, C:0.37, G:0.16, T:0.07
Consensus pattern (15 bp):
ATGACCCGAACCCAA
Found at i:35658 original size:2 final size:2
Alignment explanation
Indices: 35651--35692 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
35641 GGAACTTAGC
35651 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35693 CCATTCATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:38186 original size:6 final size:6
Alignment explanation
Indices: 38175--38199 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
38165 GATTGGCACC
38175 AACCCA AACCCA AACCCA AACCCA A
1 AACCCA AACCCA AACCCA AACCCA A
38200 TGCCGAAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (6 bp):
AACCCA
Found at i:49055 original size:2 final size:2
Alignment explanation
Indices: 49048--49094 Score: 58
Period size: 2 Copynumber: 23.0 Consensus size: 2
49038 TTATTAATTT
* * *
49048 TA TA TA TA TA TA CTA CA TA TA TA CA TA TA TA TA TA TA TA CA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49091 TA TA
1 TA TA
49095 CATACATATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:49072 original size:8 final size:8
Alignment explanation
Indices: 49048--49098 Score: 75
Period size: 8 Copynumber: 6.2 Consensus size: 8
49038 TTATTAATTT
*
49048 TATATATA
1 TATATACA
49056 TATACTACA
1 TATA-TACA
49065 TATATACA
1 TATATACA
*
49073 TATATATA
1 TATATACA
49081 TATATACA
1 TATATACA
49089 TATATACA
1 TATATACA
49097 TA
1 TA
49099 CATATTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
8 32 0.82
9 7 0.18
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (8 bp):
TATATACA
Found at i:55142 original size:8 final size:7
Alignment explanation
Indices: 55106--55135 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
55096 AAATAAAACG
55106 AAAC-AA
1 AAACAAA
55112 AAACAAA
1 AAACAAA
55119 AAACAAA
1 AAACAAA
55126 AAACAAA
1 AAACAAA
55133 AAA
1 AAA
55136 ACGAAAACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 19 0.83
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (7 bp):
AAACAAA
Found at i:70943 original size:17 final size:17
Alignment explanation
Indices: 70909--70944 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
70899 ATAGCTTCCC
*
70909 TTTCTTTTCTATTGTTT
1 TTTCTTTTCTATTCTTT
*
70926 TTTCTTTTCTTTTCTTT
1 TTTCTTTTCTATTCTTT
70943 TT
1 TT
70945 GGTTCTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTCTTTTCTATTCTTT
Found at i:77026 original size:17 final size:18
Alignment explanation
Indices: 77004--77037 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76994 GGCAACACAG
77004 TCTTGCATAAA-TCTCTT
1 TCTTGCATAAACTCTCTT
*
77021 TCTTGCTTAAACTCTCT
1 TCTTGCATAAACTCTCT
77038 GGATTTTGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.26, G:0.06, T:0.47
Consensus pattern (18 bp):
TCTTGCATAAACTCTCTT
Found at i:79389 original size:111 final size:111
Alignment explanation
Indices: 79263--79487 Score: 407
Period size: 111 Copynumber: 2.0 Consensus size: 111
79253 TCAGCAACAC
*
79263 TAACTAATTAATTAGCCACATATATATTTTTCTTCACATATATTGAAATTAACCCCTAGTTAATT
1 TAACTAATTAATTAGCCACATATATATTTTTCTTCACATATATTGAAATTAACCCCTAGATAATT
* *
79328 GGCTTATTGCTCAAAAAG-GCCATTGAATTTACACAAAACGGTCAAA
66 GGCTTATTGCTCAAAAAGACCCA-TGAATTTACACAAAACGGCCAAA
79374 TAACTAATTAATTAGCCACATATATATTTTTCTTCACATATATTGAAATTAACCCCTAGATAATT
1 TAACTAATTAATTAGCCACATATATATTTTTCTTCACATATATTGAAATTAACCCCTAGATAATT
79439 GGCTTATTGCTCAAAAAGACCCATGAATTTACACAAAACGGCCAAA
66 GGCTTATTGCTCAAAAAGACCCATGAATTTACACAAAACGGCCAAA
79485 TAA
1 TAA
79488 GCCCCTGAAC
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
111 107 0.97
112 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (111 bp):
TAACTAATTAATTAGCCACATATATATTTTTCTTCACATATATTGAAATTAACCCCTAGATAATT
GGCTTATTGCTCAAAAAGACCCATGAATTTACACAAAACGGCCAAA
Found at i:83649 original size:1 final size:1
Alignment explanation
Indices: 83643--83670 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
83633 ATTGTAATCC
83643 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
83671 CTCAGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:91516 original size:31 final size:32
Alignment explanation
Indices: 91474--91540 Score: 102
Period size: 31 Copynumber: 2.1 Consensus size: 32
91464 TTATTAGCCT
*
91474 TTTTGCCCCATGAACTTCC-AAATTC-ATGACA
1 TTTTGCACCATGAACTTCCAAAATTCGA-GACA
91505 TTTTGCACCATGAACTTCCAAAATTCGAGACA
1 TTTTGCACCATGAACTTCCAAAATTCGAGACA
91537 TTTT
1 TTTT
91541 ACCAAGAGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 18 0.55
32 14 0.42
33 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.34
Consensus pattern (32 bp):
TTTTGCACCATGAACTTCCAAAATTCGAGACA
Found at i:116988 original size:22 final size:23
Alignment explanation
Indices: 116958--117011 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
116948 ACGCAAGGTT
116958 TTTCTCAC-ATAGACTCTTGCTTG
1 TTTC-CACAATAGACTCTTGCTTG
116981 TTTCCACATATAGACTCTTGCTTG
1 TTTCCACA-ATAGACTCTTGCTTG
117005 TTTCCAC
1 TTTCCAC
117012 TTTATGTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.10
23 4 0.14
24 22 0.76
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.43
Consensus pattern (23 bp):
TTTCCACAATAGACTCTTGCTTG
Found at i:116995 original size:24 final size:24
Alignment explanation
Indices: 116966--117011 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
116956 TTTTTCTCAC
116966 ATAGACTCTTGCTTGTTTCCACAT
1 ATAGACTCTTGCTTGTTTCCACAT
116990 ATAGACTCTTGCTTGTTTCCAC
1 ATAGACTCTTGCTTGTTTCCAC
117012 TTTATGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (24 bp):
ATAGACTCTTGCTTGTTTCCACAT
Found at i:119534 original size:60 final size:60
Alignment explanation
Indices: 119462--119574 Score: 181
Period size: 60 Copynumber: 1.9 Consensus size: 60
119452 AAAATGTTCA
* * * *
119462 ATCTTTTGATTTGATCAAATAAGGGCCTAATGTTATCGAAAATGTTCAAATAAGGACTCG
1 ATCTTTTAATTTGACCAAATAAGGGCCTAATGTTATCGAAAATGCTAAAATAAGGACTCG
*
119522 ATCTTTTAATTTGACCAAATAAGGGTCTAATGTTATCGAAAATGCTAAAATAA
1 ATCTTTTAATTTGACCAAATAAGGGCCTAATGTTATCGAAAATGCTAAAATAA
119575 AGACCTAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (60 bp):
ATCTTTTAATTTGACCAAATAAGGGCCTAATGTTATCGAAAATGCTAAAATAAGGACTCG
Found at i:119734 original size:58 final size:58
Alignment explanation
Indices: 119623--119788 Score: 178
Period size: 57 Copynumber: 2.8 Consensus size: 58
119613 GACGTCAGGC
* *
119623 CCTTATTTGAGCATTTTCGATAACGTTAGACTCTTATTTGGCCAATTAAAAGATCGGG
1 CCTTATTTGAGCATTTTCAATAACGTTAGACTCTTATTTGACCAATTAAAAGATCGGG
*
119681 CCTTA-TTGAGCATTTTCAATAACGTTAG-GTCTTTATTTGACCAAATTAAAAGATCGGG
1 CCTTATTTGAGCATTTTCAATAACGTTAGACTC-TTATTTGACC-AATTAAAAGATCGGG
** * * * *
119739 TAATCATTTGAGCATTTTGGCAA-ATC-TTAGACCCTTATTTGAGCAATTAA
1 -CCTTATTTGAGCATTTT--CAATAACGTTAGACTCTTATTTGACCAATTAA
119789 TCAGATTTTT
Statistics
Matches: 91, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
56 2 0.02
57 31 0.34
58 20 0.22
59 8 0.09
60 24 0.26
61 3 0.03
62 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (58 bp):
CCTTATTTGAGCATTTTCAATAACGTTAGACTCTTATTTGACCAATTAAAAGATCGGG
Found at i:128265 original size:11 final size:10
Alignment explanation
Indices: 128245--128269 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
128235 TGCTTCTGTT
128245 AAAGAAAAAA
1 AAAGAAAAAA
128255 AAAGAAAAAA
1 AAAGAAAAAA
128265 AAAGA
1 AAAGA
128270 TAGATAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:128307 original size:19 final size:20
Alignment explanation
Indices: 128271--128308 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
128261 AAAAAAAGAT
128271 AGATAAATGGAAAGTATAGG
1 AGATAAATGGAAAGTATAGG
128291 AGAT-AATGAGAAA-TATAG
1 AGATAAATG-GAAAGTATAG
128309 AAAAGGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (20 bp):
AGATAAATGGAAAGTATAGG
Found at i:131028 original size:3 final size:3
Alignment explanation
Indices: 131020--131052 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
131010 TCATTACACA
131020 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
131053 TTTGATGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:133573 original size:59 final size:59
Alignment explanation
Indices: 133510--133642 Score: 185
Period size: 59 Copynumber: 2.3 Consensus size: 59
133500 GACGTTTGTC
* * * * * *
133510 AAAATGCTCAAATAAATGCCCGATCTTTAATTTGGCCATATAAGGGTCTAACGTTATTG
1 AAAATGCTCAAATAAAGGCACGATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCG
* * *
133569 AAAATGCTCAAATAAGGGTATGATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCG
1 AAAATGCTCAAATAAAGGCACGATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCG
133628 AAAATGCTCAAATAA
1 AAAATGCTCAAATAA
133643 GGGCCTAGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (59 bp):
AAAATGCTCAAATAAAGGCACGATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCG
Found at i:133587 original size:31 final size:31
Alignment explanation
Indices: 133549--133645 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
133539 ATTTGGCCAT
133549 ATAAGGGTCTAACGTTATTGAAAATGCTCAA
1 ATAAGGGTCTAACGTTATTGAAAATGCTCAA
* * **
133580 ATAAGGGTATGA--TCT-TT-AATTTGGC-CAA
1 ATAAGGGTCTAACGT-TATTGAAAAT-GCTCAA
* * *
133608 ATAAGAGCCTAACGTTATCGAAAATGCTCAA
1 ATAAGGGTCTAACGTTATTGAAAATGCTCAA
133639 ATAAGGG
1 ATAAGGG
133646 CCTAGCATCA
Statistics
Matches: 47, Mismatches: 12, Indels: 14
0.64 0.16 0.19
Matches are distributed among these distances:
28 14 0.30
29 6 0.13
30 5 0.11
31 22 0.47
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (31 bp):
ATAAGGGTCTAACGTTATTGAAAATGCTCAA
Found at i:133643 original size:59 final size:59
Alignment explanation
Indices: 133531--133645 Score: 194
Period size: 59 Copynumber: 1.9 Consensus size: 59
133521 ATAAATGCCC
* * * *
133531 GATCTTTAATTTGGCCATATAAGGGTCTAACGTTATTGAAAATGCTCAAATAAGGGTAT
1 GATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCGAAAATGCTCAAATAAGGGTAT
133590 GATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCGAAAATGCTCAAATAAGGG
1 GATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCGAAAATGCTCAAATAAGGG
133646 CCTAGCATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (59 bp):
GATCTTTAATTTGGCCAAATAAGAGCCTAACGTTATCGAAAATGCTCAAATAAGGGTAT
Found at i:133787 original size:60 final size:60
Alignment explanation
Indices: 133688--133804 Score: 180
Period size: 60 Copynumber: 1.9 Consensus size: 60
133678 TTCGATGTCA
* * ** *
133688 GGCCTTTATTTGAGCATTTTGGCAAACGTTAGGCACTTATTTGGCCAAATTAAAAGACCG
1 GGCCCTTATTTGAGCATTGTGGCAAACAATAGGCACTTATTTGACCAAATTAAAAGACCG
*
133748 GGCCCTTATTTGAGCATTGTGGCAAACAATAGGCCCTTATTTGACCAAATTAAAAGA
1 GGCCCTTATTTGAGCATTGTGGCAAACAATAGGCACTTATTTGACCAAATTAAAAGA
133805 TCATACCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (60 bp):
GGCCCTTATTTGAGCATTGTGGCAAACAATAGGCACTTATTTGACCAAATTAAAAGACCG
Found at i:138368 original size:25 final size:25
Alignment explanation
Indices: 138340--140692 Score: 3126
Period size: 25 Copynumber: 90.6 Consensus size: 25
138330 TCATATAGCA
* *
138340 TAGGGCCATGTAGATGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
138365 TAGGGAATCATATAGTT-CTATATTCCG
1 TAGGG--CCATATAGTTGC-ATATTCAG
* *
138392 TAAGGCATCATGTAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAG
*
138419 TAGGGTATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
138446 TAGGGGCCATATAATTGCATATTCAG
1 TA-GGGCCATATAGTTGCATATTCAG
138472 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*** * *
138497 TAGCAAATCACATAGTTGCATATTCAA
1 TAG--GGCCATATAGTTGCATATTCAG
*
138524 TAGGGCATCATATAGTTGCATATTCAA
1 TAGGGC--CATATAGTTGCATATTCAG
138551 TAGGGCATCATATAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAG
* **
138578 TTTGGAATCATATAGTTGCATATTCAG
1 -TAGG-GCCATATAGTTGCATATTCAG
*
138605 TAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
138630 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
138657 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
* *
138684 TATGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
138709 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
138734 TAGGGAATCACATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
138761 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
138788 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
138813 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
138840 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
138865 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
138892 TAGGGCATCATATAGTTGCATATTCAA
1 TAGGGC--CATATAGTTGCATATTCAG
*
138919 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
138946 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
138971 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
138996 TAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139021 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
***
139046 TATGAAATCATATAGTTGCATATTCAG
1 TA-G-GGCCATATAGTTGCATATTCAG
139073 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139098 TAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
139123 TAGGGAATCATATAGTTGCACATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
139150 TAGGGCCATATAGTTGCATTTTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139175 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
139202 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
139229 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139254 TAGGGCCATATAGTTGCGTATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139279 TAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
**
139304 TAGGAAATCATATAGTTGCATATTCAG
1 TAGG--GCCATATAGTTGCATATTCAG
139331 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
139356 TAGGGTCATATAGTTACATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
139381 TAGGGGATCATATAGTTGCACATTCAG
1 TA-GGG-CCATATAGTTGCATATTCAG
* *
139408 TATGGCCATATAGTTGCATTTTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139433 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
139460 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
139487 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139512 TAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139537 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139562 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139587 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
139614 TAGGGACATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139639 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139664 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
139691 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139716 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
139743 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139768 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
139793 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
**
139818 TAGGAAATCATATAGTTGCATATTCAG
1 TAGG--GCCATATAGTTGCATATTCAG
139845 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139870 TAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139895 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
139922 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
139949 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
139974 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140001 TAGGGCATCATATAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAG
*
140028 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140055 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140080 TAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
140105 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
140130 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140155 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140182 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140207 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
140234 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140261 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140286 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
140313 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
*
140340 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140367 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* * *
140392 TAGGGCCATGTTGTTGTATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140417 TAGGGCCATATAGTTGCATATTCCG
1 TAGGGCCATATAGTTGCATATTCAG
*
140442 TAGGGATTCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140469 TA-GGCATTCATATAGTTGCATATTCAG
1 TAGGGC---CATATAGTTGCATATTCAG
*
140496 TAGGGCCATATAGTTGCATATTTAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140521 TAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
140548 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140573 TAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
* *
140598 TAGGGAATCACATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAG
** *
140625 TAGGGCCATATTTTTTGCTACATATCAG
1 TAGGGCCATA-TAGTTGC-ATAT-TCAG
140653 TAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAG
*
140678 TAGGGCCATACAGTT
1 TAGGGCCATATAGTT
140693 CCTAATTTTA
Statistics
Matches: 2118, Mismatches: 136, Indels: 148
0.88 0.06 0.06
Matches are distributed among these distances:
25 1066 0.50
26 41 0.02
27 987 0.47
28 24 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (25 bp):
TAGGGCCATATAGTTGCATATTCAG
Found at i:138637 original size:52 final size:50
Alignment explanation
Indices: 138340--140692 Score: 3180
Period size: 52 Copynumber: 45.3 Consensus size: 50
138330 TCATATAGCA
* * *
138340 TAGGGCCATGTAGATGCATATTCAGTAGGGAATCATATAGTT-CTATATTCCG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGC-ATATTCAG
* *
138392 TAAGGCATCATGTAGTTGCATATTCAGTAGGGTATCATATAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
138446 TAGGGGCCATATAATTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TA-GGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*** * * *
138497 TAGCAAATCACATAGTTGCATATTCAATAGGGCATCATATAGTTGCATATTCAA
1 TAG--GGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
138551 TAGGGCATCATATAGTTGCATATTCAGTTTGGAATCATATAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAG-TAGG-GTCATATAGTTGCATATTCAG
*
138605 TAGGGTCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* * * *
138657 TAGGGAATCATATAGTTGCATATTCAGTATGGCCATGTAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
138709 TAGGGCCATATAGTTGCATATTCAGTAGGGAATCACATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
138761 TAGGGAATCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
138813 TAGGGAATCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
138865 TAGGGAATCATATAGTTGCATATTCAGTAGGGCATCATATAGTTGCATATTCAA
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
138919 TAGGGAATCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
138971 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
**
139021 TAGGGCCATATAGTTGCATATTCAGTATGAAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTA-G-GGTCATATAGTTGCATATTCAG
139073 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* * * *
139123 TAGGGAATCATATAGTTGCACATTCAGTAGGGCCATATAGTTGCATTTTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
139175 TAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
139229 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCGTATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
139279 TAGGGCCATGTAGTTGCATATTCAGTAGGAAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGG--GTCATATAGTTGCATATTCAG
*
139331 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTACATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* * * * *
139381 TAGGGGATCATATAGTTGCACATTCAGTATGGCCATATAGTTGCATTTTCAG
1 TA-GGG-CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
139433 TAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
139487 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
139537 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
139587 TAGGGAATCATATAGTTGCATATTCAGTAGGGACATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
139639 TAGGGCCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
139691 TAGGGCCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
*
139743 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
139793 TAGGGCCATATAGTTGCATATTCAGTAGGAAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGG--GTCATATAGTTGCATATTCAG
139845 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
139895 TAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
139949 TAGGGCCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
140001 TAGGGCATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGC--CATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
140055 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATGTAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
140105 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
140155 TAGGGAATCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
140207 TAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
140261 TAGGGCCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
*
140313 TAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* * * *
140367 TAGGGCCATATAGTTGCATATTCAGTAGGGCCATGTTGTTGTATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
*
140417 TAGGGCCATATAGTTGCATATTCCGTAGGGATTCATATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
* *
140469 TA-GGCATTCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTTAG
1 TAGGGC---CATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
140521 TAGGGAATCATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGG--CCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
* *
140573 TAGGGCCATGTAGTTGCATATTCAGTAGGGAATCACATAGTTGCATATTCAG
1 TAGGGCCATATAGTTGCATATTCAGTAGGG--TCATATAGTTGCATATTCAG
** * *
140625 TAGGGCCATATTTTTTGCTACATATCAGTAGGGCCATATAGTTGCATATTCAG
1 TAGGGCCATA-TAGTTGC-ATAT-TCAGTAGGGTCATATAGTTGCATATTCAG
*
140678 TAGGGCCATACAGTT
1 TAGGGCCATATAGTT
140693 CCTAATTTTA
Statistics
Matches: 2111, Mismatches: 124, Indels: 132
0.89 0.05 0.06
Matches are distributed among these distances:
50 495 0.23
51 35 0.02
52 1081 0.51
53 57 0.03
54 427 0.20
55 16 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (50 bp):
TAGGGCCATATAGTTGCATATTCAGTAGGGTCATATAGTTGCATATTCAG
Found at i:167744 original size:327 final size:325
Alignment explanation
Indices: 167017--168474 Score: 2166
Period size: 325 Copynumber: 4.5 Consensus size: 325
167007 GTTTTTAAAT
* * ** * * *
167017 GAAATCGTGTACTAACAATCACGG-TTTTGGGGTAAAAACGC-ACTC-GGGCCCTGCCTTAGTTT
1 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* * *
167079 TACATGATTTTTGGCAGAAAGACTCCTTGAAACATCTATATTAATCGAACCAAATCTCAGCCACA
66 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
* * * * * *
167144 TAAGATATAAGGACTTGTTTTTACGAACACCTGAATCTTATTTGGATTTAATTAGGAATAAATTC
131 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
* * * * *
167209 AGAAAATCAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTTAATATTTTTGACGTTGAAAT
196 GGAAAA-AAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * * * *
167274 ACATAATTTTTT-TTAAGAATTGTGTAAAAAAAATTATGAAAATTTTTTTGGTTCAGATTTTAGC
260 ATATAATTTTTTCTGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTTCGGTTCAGGTTTTAGC
167338 C
325 C
* *
167339 GAAATCGTATACTAACCATCATGGTTTTT-GGGCAAAAATCGCGTTTCGGGGCCCCGGCTCAGTT
1 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAA-CGCGTTTCGGGGCCCCGGCTCAGTT
*
167403 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCG-ACATAAATCTCAGCCA
65 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAAC-CAAATCTCAGCCA
*
167467 CATAGGATATAAGGATGTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
129 CATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
167532 TCGGAAAAAAACTTGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
194 TCGGAAAAAAA--TGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
167597 ATTATATAATTTTTTCTGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTTCGGTTCAGGTTTT
257 ATTATATAATTTTTTCTGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTTCGGTTCAGGTTTT
167662 A-CAC
322 AGC-C
*
167666 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCAGCTCAGTTT
1 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* *
167731 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCAATATTCATCGAACCAAATCTCAGCCACA
66 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
*
167796 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTGGATTTAATTAGGAATAAATTC
131 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
* *
167861 GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCGTTGAATTA
196 GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
* * * * * *
167926 TATAACTTTTTCT-AAGAATTAGTGTTAAAAAATTTATGAAAAACTTTTT-GGGTCAGTTTTTAA
261 TATAATTTTTTCTGAAGAATT-GTGTAAAAAAAATTATGAAAAA-TTTTTCGGTTCAGGTTTTAG
167989 CC
324 CC
* * * * * * *
167991 GAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAATCGCGTTTCCGGGCTCCGACTTAGTTT
1 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* *
168056 TGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAATCAAATCTCAGCCACA
66 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
* *
168121 TAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGGAATAAATTC
131 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
* *
168186 GG-AAAAAATGGAAAAAACGTTATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGCATT
196 GGAAAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* *
168250 ATATAATTTTTTC-GAAGAATTGCGTAAAAAAAATTATGAAAAATTTTTCGATTCA-GTTTTAGC
260 ATATAATTTTTTCTGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTTCGGTTCAGGTTTTAGC
168313 C
325 C
* * * *
168314 GAAATCGTGTACTAACTATCATGGTTTTTGGGCTAAAATCGCGTTTGGGGGCCCCGGCTCAGTTT
1 GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* * * *
168379 TGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTGTCAAACCAAATCTCACCCACA
66 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
168444 TAGGATATAAGGATTTGTTTTTACGAGCATC
131 TAGGATATAAGGATTTGTTTTTACGAGCATC
168475 GGGGCTAGTT
Statistics
Matches: 1035, Mismatches: 84, Indels: 33
0.90 0.07 0.03
Matches are distributed among these distances:
322 29 0.03
323 168 0.16
324 45 0.04
325 482 0.47
326 70 0.07
327 231 0.22
328 10 0.01
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (325 bp):
GAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
TATAATTTTTTCTGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTTCGGTTCAGGTTTTAGCC
Found at i:169164 original size:10 final size:9
Alignment explanation
Indices: 169121--169178 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 9
169111 TAAAAGTAAC
169121 TAAGAAAAA
1 TAAGAAAAA
*
169130 TAAACAAAAA
1 T-AAGAAAAA
169140 TAA-AAGAAA
1 TAAGAA-AAA
169149 -AAGAAAAA
1 TAAGAAAAA
169157 TAACGAAAAA
1 TAA-GAAAAA
*
169167 TAA-AAAGA
1 TAAGAAAAA
169175 TAAG
1 TAAG
169179 GGTAAGAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
8 14 0.34
9 10 0.24
10 17 0.41
ACGTcount: A:0.76, C:0.03, G:0.10, T:0.10
Consensus pattern (9 bp):
TAAGAAAAA
Found at i:169164 original size:16 final size:17
Alignment explanation
Indices: 169135--169172 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
169125 AAAAATAAAC
169135 AAAAATAAAAGAAAAAG
1 AAAAATAAAAGAAAAAG
* *
169152 AAAAAT-AACGAAAAAT
1 AAAAATAAAAGAAAAAG
169168 AAAAA
1 AAAAA
169173 GATAAGGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (17 bp):
AAAAATAAAAGAAAAAG
Found at i:170887 original size:76 final size:76
Alignment explanation
Indices: 170750--170901 Score: 182
Period size: 76 Copynumber: 2.0 Consensus size: 76
170740 ACAAGGACCC
* * *
170750 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
1 CGACTCCACCTGGGCGCCCACATGGTTGCCTGGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
170815 GGGCAGTGTCA
66 GGGCAGTGTCA
* * * * **
170826 CGACTCCAGCTGGGTGCCCACATAGTTTGTCTGGAG-ACCCATGT-GTTTCGCCTGATCACCCAG
1 CGACTCCACCTGGGCGCCCACAT-GGTTGCCTGGAGCACCCATGTGGTTT-GCCTGAGAACCCAG
*
170889 ATGGGCTGTGTCA
64 ATGGGCAGTGTCA
170902 TAGCTCATCA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
75 4 0.06
76 51 0.80
77 9 0.14
ACGTcount: A:0.17, C:0.30, G:0.29, T:0.24
Consensus pattern (76 bp):
CGACTCCACCTGGGCGCCCACATGGTTGCCTGGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Found at i:172902 original size:647 final size:643
Alignment explanation
Indices: 171252--175316 Score: 5789
Period size: 647 Copynumber: 6.3 Consensus size: 643
171242 GGTCTGATCA
* *
171252 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGACTAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
171317 CGG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
66 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * * *
171381 AATATAATTTTTTCGAAAAATTGTGTAAAAAAAATTATGAAAAATTTTTAGTTTCAGTTTTAGCC
131 TATATAA-TTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAA-TTTTCGGTTCAGTTTTAGCC
* * *
171446 GAAATCATGTACTAACCATCATGGTTTTTGGGCTAAAATCACGTTTCGGGGCCCCGGCTCAGTTT
194 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* * *
171511 TGCATGAACTTTGGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
259 TGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
*
171576 TAGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
324 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
*
171641 AG-AAAAAAT--------GATATTAGAAGCGTGAAAAGACC-TTTAATCTTTTTGACGTTGAATT
389 GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG-CCATTTAATCTTTTTGACGTTGAATT
* *
171696 ATATAATTTTTTTCTAAGAATTGTG-TAAAAAATTATGAAAAATTTTTCGGTTTAGTTTTTAGCC
453 ATATAA-TTTTTTCTAAGAATTGTGTTAAAAAATTATGAAAAATTTTT-GGGTCAGTTTTTAGCC
* *
171760 GAAATCGTGTACTAACCATCATGGTTTTTTTTGGCTAAAAACGCGTTTCGAGGCCCCGACTCAGT
516 GAAATCGTGTACTAACCATCATGG-TTTTTGT-GCTAAAAACGCGTTTCG-GGCCCCGGCTCAGT
* * *
171825 TTTGCATGATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTCATCGTACCAAATCTCAGCCA
578 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
171890 C
643 C
* *
171891 ATAGGATATAACGATTTGTTATTGA-GAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
1 ATAGGATATAAGGATTTGTT-TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
*
171955 TCGG--TAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
65 TCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
* *
172018 TTATATAA--TTT-T-----TT-TGAAAAAAAAAGTATGAAAAATTTTTCGGTTCATGTTTTAGC
130 TTATATAATTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAA-TTTTCGGTTCA-GTTTTAGC
* * * * * *
172074 CGGAATTGTGTACTAACCTTTATGGTTTTTGGGTTAAAAACGCGTTTCGAGGCCCCGGCTCAGTT
193 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
* * *
172139 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTGTATTCATCGAACCAAATCTCAGCCAC
258 TTGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * **
172204 ATAGGATATAAGGATTTGTTTTTACGAGCATCTCAAT-TATGTTTGGATTTAATTTTGAATAAAT
323 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGGAATAAAT
*
172268 TCGGAAAAAAA-GGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCGTTGAAT
387 TCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
* * *
172332 TATATAACTTTTTCTAAGAATTGTGTTAAAAATTTATGAAAAACTTTTTGGGTCAGTTTTTATCC
452 TATATAATTTTTTCTAAGAATTGTGTTAAAAAATTATGAAAAA-TTTTTGGGTCAGTTTTTAGCC
* * *
172397 AAAATCGTGTAGTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGAGCCCCGGCTTAGTTT
516 GAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGG-GCCCCGGCTCAGTTT
* *
172462 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGGACCAAATCTCAACCAC
580 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * *
172526 ATAGGACATAAGGATTTGTCTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
172591 CAGGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
66 C-GG-AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
* * *
172656 ATTATATAATTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAATGTTTCGTTTCAGTTTTAGA
129 ATTATATAATTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAAT-TTTCGGTTCAGTTTTAGC
* * *
172721 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTTAAATCACGTTTCGGGGCCCCGGCTCAGTT
193 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
* * *
172786 TTGCATGAACTTTGGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
258 TTGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* *
172851 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATGAATT
323 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* *
172916 CAG-AAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAATT
388 CGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAATT
* * *
172980 ATATAATTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCC
453 ATATAATTTTTTCTAAGAATTGTGTT-AAAAAATTAT-GAAAAATTTTTGGGTCAGTTTTTAGCC
*
173045 GAAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
516 GAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTC-GGGCCCCGGCTCAGTTT
*
173110 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
580 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * * * *
173174 ATAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * *
173239 C--AGAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
66 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * *
173302 TATATAATTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGC
131 TATATAATTTTT-CTAAGAATTGTGTAAAAAAAATTAT-GAAAAATTTTCGGTTCAG-TTTTAGC
* *
173367 CGAAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
193 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
* *
173432 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
258 TTGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * * * *
173497 ATAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATT
323 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * * *
173562 CAGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTTAATATTTTTGACGTTGCAT
388 C-GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
* * * * * * * *
173627 TATATAATTTTTTCGAAGTATTGAGTAAAAAAAAGTATGAAATATTTTCGGTTCAG-TTTTAGCC
452 TATATAATTTTTTCTAAGAATTGTGT-TAAAAAATTATGAAAAATTTTTGGGTCAGTTTTTAGCC
* * * * *
173691 GAAAATCGTGTACTAACCATCATTGATTTTGGGCTAAAATCGCGTTTTGGGGCCCCGGCTCAGTT
516 G-AAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCG-TTTCGGGCCCCGGCTCAGTT
* * * * * * *
173756 TTGCATTAATTTAGGCAGAAATAATCCTTGAAATATCTATATTTATCGAACCAAATCTCAGTCAT
579 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* *
173821 AGAAGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
173886 C--AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
66 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * *
173949 TATATATCTTTTTTCTAAGAATTGTGT-TAAAAATTTATGAAAAACTTTTCGGTTCAGGTTTTAA
131 TATATA--ATTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAA-TTTTCGGTTCA-GTTTTAG
* * * *
174013 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCATTTCGAGGCCCCAGCTCTGT
192 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
174078 TTTGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
257 TTTGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
* * * *
174143 CATAGGATTTAAGGATTT-TTTTTACGAGCATCTGAATCTTTTTTCGATTTAAATAAGAATAAAT
322 CATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
174207 TCGGAAAAAAATGG-AAAACGATATTAGAAGCGTGAAAAG-CACTTTAATCTTTTTGACGTTGAA
387 TCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCA-TTTAATCTTTTTGACGTTGAA
** *
174270 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAATTTTATGGGAAACTTTTTAG
451 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAA-TTATGAAAAATTTT-TGGGTCAGTTTTTAG
* *
174335 CCGAAATCGTGTACTAACCATCATGGTTTTTG-CCT-AAAA--CG---C--GCCCCGTCTCAGTT
514 CCGAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGCCCCGGCTCAGTT
*
174391 TTGCATGATTTTTGGCAGAAAGACACCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
579 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
*
174456 ATAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTTA-GAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA-TTAGGAATAAAT
* *
174520 TCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTCTAATCTTTTTGAAGTTGAA
65 TCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
174585 TTATATAACTTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGCC
130 TTATATAA-TTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGCC
* *
174650 GAAATCGTGTACTAACCATCATGATTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGTTT
194 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* * * *
174715 TGCATGAATTTTGGCAGAAAGACTTCTTGAAACATCTATATTGATTGAACCAAATCTCAGCCACA
259 TGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
* * *
174780 TAGGATATAAGGATTTGTTTTTACCAGCATCT-ATATCTTGTTTGGACTTAATTAGGAATAAATT
324 TAGGATATAAGGATTTGTTTTTACGAGCATCTGA-ATCTTGTTTCGATTTAATTAGGAATAAATT
* * *
174844 CGGAAAAAAAATGGAAATACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGGCGTTGAAT
388 CGG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
* *
174909 TATATAATTTTTCCTAAGAATTGTGTTAAAAAATAATGAAAAAAATTTTT-GGTCAGTTTTTAGC
452 TATATAATTTTTTCTAAGAATTGTGTTAAAAAATTATG--AAAAATTTTTGGGTCAGTTTTTAGC
* * * * * * *
174973 CGAAATCATGTACTAACACCATCATGGTTTTTGGGTTATAATCACGTTTCAGGGCCCCAGCTCAG
515 CGAAATCGTGTACT-A-ACCATCATGGTTTTTGTGCTAAAAACGCGTTTC-GGGCCCCGGCTCAG
* ** *
175038 TTTTGCTTGATTTTTACCAGAAAGACTCCTTGAAATATCTATATTTATCGAATCAAATCTCAGCC
577 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCC
175103 AC
642 AC
* *
175105 ATAGGATATAAGGATTTGTTTTTTCGAGCATCTGAATCTTGTTTCGATTTAATTATGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * *
175170 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAGAGCCATTTAATCTTTTTGGCGTTGAAT
66 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * ** * *
175235 TATATAACTTTTTATAAGAATTGTGTTAAAAAATTTATGAAATTTTTTTTGGGTT-AGTTTTTAA
131 TATATAA-TTTTTCTAAGAATTGTGTAAAAAAAATTATGAAA--AATTTTCGGTTCAG-TTTTAG
175299 CCGAAATCGTGTACTAAC
192 CCGAAATCGTGTACTAAC
175317 AATCTTGTTG
Statistics
Matches: 3066, Mismatches: 280, Indels: 148
0.88 0.08 0.04
Matches are distributed among these distances:
628 30 0.01
629 185 0.06
630 6 0.00
634 4 0.00
635 423 0.14
636 101 0.03
637 218 0.07
638 149 0.05
639 152 0.05
640 4 0.00
641 7 0.00
643 12 0.00
644 152 0.05
645 73 0.02
646 263 0.09
647 671 0.22
648 341 0.11
649 242 0.08
650 2 0.00
651 31 0.01
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (643 bp):
ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
TATATAATTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGCCGA
AATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTG
CATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACATA
GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTCGG
AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTATA
TAATTTTTTCTAAGAATTGTGTTAAAAAATTATGAAAAATTTTTGGGTCAGTTTTTAGCCGAAAT
CGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGCCCCGGCTCAGTTTTGCATG
ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
Found at i:173159 original size:323 final size:323
Alignment explanation
Indices: 171252--179370 Score: 6108
Period size: 323 Copynumber: 24.5 Consensus size: 323
171242 GGTCTGATCA
* *
171252 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGACTAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* *
171317 CGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATA
66 CAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * * * * *
171382 ATATAATTTTTTCGAAAAATTGTGTAAAAAAAATTATGAAAAATTTTTAGTTTCAG-TTTTAGCC
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCC
* * *
171446 GAAATCATGTACTAACCATCATGGTTTTTGGGCTAAAATCACGTTTCGGGGCCCCGGCTCAGTTT
195 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
** * *
171511 TGCATGAACTTTGGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
260 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
*
171575 ATAGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
*
171640 CAGAAAAAAT--------GATATTAGAAGCGTGAAAAGACCTTTAATCTTTTTGACGTTGAATTA
66 CAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
* *
171697 TATAATTTTTTTCTAAGAATTGTG-T-AAAAAATTATGAAAAATTTTTCGGTTTAGTTTTTAGCC
131 TATAA-TTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCC
* * *
171760 GAAATCGTGTACTAACCATCATGGTTTTTTTTGGCTAAAAACGCGTTTCGAGGCCCCGACTCAGT
195 GAAATCGTGTACTAACCATCATGG--TTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
* * *
171825 TTTGCATGATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTCATCGTACCAAATCTCAGCCA
258 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
171890 C
323 C
* *
171891 ATAGGATATAACGATTTGTTATTGA-GAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
1 ATAGGATATAAGGATTTGTT-TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAAT
* *
171955 TCGGTAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
65 TCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* *
172020 ATATAATTTTTT-T--GAA-------AAAAAAAGTATGAAAAATTTTTCGGTTCA-TGTTTTAGC
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGT-TTTTAGC
* * * * * *
172074 CGGAATTGTGTACTAACCTTTATGGTTTTTGGGTTAAAAACGCGTTTCGAGGCCCCGGCTCAGTT
194 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
* *
172139 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTGTATTCATCGAACCAAATCTCAGCCAC
259 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * **
172204 ATAGGATATAAGGATTTGTTTTTACGAGCATCTCAAT-TATGTTTGGATTTAATTTTGAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCT-TGTTTCGATTTAATTAGGAATAAAT
* * * *
172268 TCGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCGTTGAATT
65 TCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * * * * *
172333 ATATAACTTTTTCTAAGAATTGTGTT-AAAAATTTATGAAAAACTTTTTGGGTCAGTTTTTATCC
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCC
* * * * *
172397 AAAATCGTGTAGTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGAGCCCCGGCTTAGTTT
195 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
* *
172462 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGGACCAAATCTCAACCAC
260 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * *
172526 ATAGGACATAAGGATTTGTCTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
172591 CAGGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
66 CA-G---AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
* * *
172656 ATTATATAA-TTTTTCGAAGAATTGTGTAAAAAAAATTATG-AAAAATGTTTCGTTTCAG-TTTT
127 ATTATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAAT-TTTCGGTTCAGTTTTT
* * * *
172718 AGACGAAATCGTGTACTAACCATCATGGTTTTTGGGCTTAAATCACGTTTCGGGGCCCCGGCTCA
191 AGCCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCA
** * *
172783 GTTTTGCATGAACTTTGGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGC
256 GTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGC
172848 CAC
321 CAC
* *
172851 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATGAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* *
172916 CAGAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTA
66 CAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
* * *
172981 TATAATTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCCG
131 TATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCCG
* *
173046 AAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTT
196 AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTT
*
173111 GCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
261 GCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * * * *
173174 ATAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* *
173239 CAGAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTA
66 CAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
* * *
173304 TATAATTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCCG
131 TATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCCG
* *
173369 AAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTT
196 AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTT
*
173434 GCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
261 GCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * * * *
173497 ATAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * *
173562 CAGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTTAATATTTTTGACGTTGCAT
66 CAG--AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * * * *
173627 TATATAATTTTTTCGAAGTATTGAGTAAAAAAAAGTATG-AAATATTTTCGGTTCAG-TTTTAGC
129 TATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGC
* * * *
173690 CGAAAATCGTGTACTAACCATCATTGATTTTGGGCTAAAATCGCGTTTTGGGGCCCCGGCTCAGT
194 CG-AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
* * * * * *
173755 TTTGCATTAATTTAGGCAGAAATAATCCTTGAAATATCTATATTTATCGAACCAAATCTCAGTCA
258 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
*
173820 T
323 C
* *
173821 AGAAGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
*
173886 CAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
66 CAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
* * * * *
173951 TATATCTTTTTTCTAAGAATTGTGTT-AAAAATTTATGAAAAACTTTTCGGTTCAGGTTTTAACC
131 TATA-ATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCC
* * * *
174015 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCATTTCGAGGCCCCAGCTCTGTTT
195 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
*
174080 TGCATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
260 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * * *
174144 ATAGGATTTAAGGATTT-TTTTTACGAGCATCTGAATCTTTTTTCGATTTAAATAAGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* *
174208 CGGAAAAAAATGG-AAAACGATATTAGAAGCGTGAAAAGCACTTTAATCTTTTTGACGTTGAATT
66 CAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * *** *
174272 ATATAATTTTTTCTAAGAATTGTGTTAAAAAATTTATG-AAAAATTTTATGGGAAACTTTTTAGC
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTT-CGGTTCAGTTTTTAGC
* *
174336 CGAAATCGTGTACTAACCATCATGGTTTTT-GCCT-AAAA--CG---C---GCCCCGTCTCAGTT
194 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
*
174391 TTGCATGATTTTTGGCAGAAAGACACCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
259 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
*
174456 ATAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTTA-GAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA-TTAGGAATAAAT
* * *
174520 TCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTCTAATCTTTTTGAAGTTGAA
65 TC--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
* *
174585 TTATATAACTTTTTCTAAGAATTGTGTAAAAAAAATTATG-AAAAATTTTCGGTTCAG-TTTTAG
128 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAG
* *
174648 CCGAAATCGTGTACTAACCATCATGATTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGT
193 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
* * * * *
174713 TTTGCATGAATTTTGGCAGAAAGACTTCTTGAAACATCTATATTGATTGAACCAAATCTCAGCCA
258 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
174778 C
323 C
* * *
174779 ATAGGATATAAGGATTTGTTTTTACCAGCATCT-ATATCTTGTTTGGACTTAATTAGGAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGA-ATCTTGTTTCGATTTAATTAGGAATAAAT
* * *
174843 TCGGAAAAAAAATGGAAATACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGGCGTTGAA
65 TC--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
* * *
174908 TTATATAATTTTTCCTAAGAATTGTGTT-AAAAAATAATGAAAAAAATTTTTGG-TCAGTTTTTA
128 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATG-AAAAAATTTTCGGTTCAGTTTTTA
* * * * * * *
174971 GCCGAAATCATGTACTAACACCATCATGGTTTTTGGGTTATAATCACGTTTCAGGGCCCCAGCTC
192 GCCGAAATCGTGTACT-A-ACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTC
* ** *
175036 AGTTTTGCTTGATTTTTACCAGAAAGACTCCTTGAAATATCTATATTTATCGAATCAAATCTCAG
255 AGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAG
175101 CCAC
320 CCAC
* *
175105 ATAGGATATAAGGATTTGTTTTTTCGAGCATCTGAATCTTGTTTCGATTTAATTATGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * *
175170 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAGAGCCATTTAATCTTTTTGGCGTTGAAT
66 C--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * *** * *
175235 TATATAACTTTTTATAAGAATTGTGTTAAAAAATTTATGAAATTTTTTTTGGGTT-AGTTTTTAA
129 TATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAA-AAATTTTCGGTTCAGTTTTTAG
* * * *** * ** ** ****
175299 CCGAAATCGTGTACTAACAATC-TTGTTGGCGTTGAATTATATAAC-ATTTTC----TACAAATT
193 CCGAAATCGTGTACTAACCATCATGGTT---TTTGGGCTA-AAAACGCGTTTCGGGGCCCCGGCT
*** ** * * * * * *** * * * ***
175358 GC-G-TTAAAAACAATTAT-G-AAAAAAAAT--TTGGCTTA-GT-T-TTTAGCCGAAATCGTGTA
254 -CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTA-TCG-AACCAAAT-
*
175414 CT-AACCATC
315 CTCAGCCA-C
* * * * ** * * * ** *
175423 ATGGTTTTTGGTCTAA-AATCGCGTTTTT--GGGC-CCCGGCTCAGTT-TTACATGATTT--TT-
1 ATAG-----GATATAAGGAT-TTGTTTTTACGAGCATCTGAATC--TTGTTTC--GATTTAATTA
* * * * * *
175480 GGCAGA-AAGACTCCTTGAAATATCCAT--AATTATCGAACGAAATCTCAGCCA-CATAGGATAT
56 GG-A-ATAA-A-TTC-AGAAA-A--AATGGAA--A---AACGATAT-T-AG-AAGCGT--GA-A-
** * * * * * * * *
175541 AAG-GATTT-GT-TTTTACGAGCATCTGAATCTTGTTTAGATTTAATTATGAATAAATTCG-G--
101 AAGCCCTTTAATCTTTT-TGA-CGT-TGAA--TTATATA-ATTT-TTTCT-AA-GAATT-GTGTT
* * * ** **** ** * * **
175600 AAAAAAA-T-GGAAAAATGATATTAGAATC-GTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
156 AAAAAAATTATGAAAAA--ATTTTCGGTTCAGTTTTTAG-CC-GAAATC-GTGT-AC--T-AACC
** * *** ** **** *
175662 AT-ATAATTTTTTCGAAGAATTGTGTAAAAA-AAATTAT-GAAAAGCCCTTTAATC-TTTTTGAC
212 ATCAT-GGTTTTT-G--G----G-CTAAAAACGCGTT-TCG--GGGCCC-CGGCTCAGTTTTG-C
* ** * ** * * * ***
175723 GTTGAATTATTTAATTTTTTC-G-AAGAATTATGTAAAAAATACTATGAAAAATTTTTCGGTTC-
263 -----ATGA--T--TTTTGGCAGAAAGACTCCT-TGAAATAT-CTAT-----ATTTATCGAACCA
* * * *
175785 AGTTTTAGCCGAA
312 AATCTCAGCC-AC
* * * * * * ** *** * * *
175798 ATCGTG-TATTAGCCATCATGGTCTTT--GGGCA--TGAAT-TT-TGGCAGAAAGACTCCTTGAA
1 ATAG-GATATAAG-GAT--TTGTTTTTACGAGCATCTGAATCTTGTTTC-GATTTAAT--TAGGA
* * * * * * * ** * ** *
175856 ATATCTATATTCATCGAACCAAATCTCAGCCACATAGGATATGAGGATTTGTTTTTACGAG-CAT
59 ATA---A-ATTCA--GAA--AAA-AT--G-GAAAAACGATATTA-GA--AG-CGTGAAAAGCCCT
* * * *** * * * **
175920 CTGAATCTTGTTTG--GATTTAA-TA-AGGAATAAATTCGGAAAAAAATG-GAAGAACGATATTA
108 -TTAATCTT-TTTGACG-TTGAATTATA-TAATTTTTTC--TAAGAATTGTG-TTAA--A-A--A
** * * ** ** *
175980 GAATCGTGAAAAGCCCTTTAATATTTTTGATTTTGAATT-ATATAATTTTTTCTAAGAATTGTGT
161 -AATTATG-AAA-------AA-ATTTTCG-----G--TTCA-GT--TTTTAGCCGA-AATCGTGT
** ** * * * ** ** * * **** ****
176044 AAAAAAAATTATGATAAATTTTTCGG-T--TCA-GTTTTTAGCCGAAATCGTG-TACTAACCAT-
205 ACTAACCATCATG----GTTTTTGGGCTAAAAACGCGTTTCG-GGGCCCCG-GCT-C-AGTTTTG
* * * * **
176103 CATGGTTTTTGGGCTA-AAA-ACGCGTTTCGAGGACTCGGCTCAGT-TTTGCAT-GATTTTTGAC
262 CATGATTTTT-GGC-AGAAAGACTC-CTT-GA--AAT-ATCT-A-TATTT--ATCGA------AC
* * *** *
176164 AGAAAGACTCTTTCAA
310 -CAAA-TCTCAGCCAC
** * * **** * * * ** *** * *
176180 ATATTTATATTCATCGCATCAAATCTCAGCCA-CATAGGATATAAGGATTT-GTTTTTACGAGCA
1 ATA-GGATA-T-A-AGGATTTGTTTTTA-CGAGCATCTGA-ATCTTG-TTTCG-ATTTA--A--T
** *** ** ** *
176243 TCTGAATCTTGTTTGGATTTAATTAGGAATAAATTCGAAAAAAAATGGAAAAACGATATTAGAAG
54 TAGGAAT-AAATTCAGA-AAAAAT-GGAA---------------------AAACGATATTAGAAG
* * * * * * * *
176308 TGTGAAAAGCCATTTAATCTTTTTGGCGTTGAATTAAATAACTTTTTCTAAAAATTGTTTTAACA
95 CGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCTAAGAATTGTGTTAAAA
* *
176373 AAATTATGAAAAAAAATTT-GGGTCAGTTTTTAGCCGAAATCGTGTACTTAACCATCATGGTTTT
160 AAATTATG-AAAAAATTTTCGGTTCAGTTTTTAGCCGAAATCGTGTAC-TAACCATCATGGTTTT
* *
176437 GGGGCTAAAAACGCTTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTT
223 TGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTT
176502 GAAATATCTATATTTATCGAACCAAATCTCAGCCAC
288 GAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * *
176538 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCGTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * * *
176603 CGAAAAAAAATATTGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCATTTTGGCGTTGAA
66 C--AGAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
* * * * * *
176668 TTATATAACTTTTTCTAAGAATTGTGTT-AAAAATTTATGAAAAAATTTTTGGGTCAATTTTTAC
128 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAG
* * * * *
176732 CCGAAATCGTGTACTAAACATCATGGTTTTTGGGCTAAAAAGGCTTTTCGGGGCCCCTGCTCAAT
193 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
* *
176797 TTTGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTTATCGTACCAAATCTCAGCCA
258 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
176862 C
323 C
* * * * *
176863 ATAGCATATAAGGATTTGTTTTAACGACCATCTGAATCGTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * *
176928 CGAAAAAAAATTGG-AAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCATTGAAT
66 C-AGAAAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
** ** ** * *
176992 TATATAACATTTTCTACA-AACGGTGTTAAAAACAATTATGAAAAAAAAAAATTAGGGTCAGTTT
129 TATATAATTTTTTCTA-AGAATTGTGTTAAAAA-AATTATG---AAAAAATTTTCGGTTCAGTTT
* * * *
177056 TTAGCCGAAATCGTGTACTAATCATCATGGTTTTGGGGCTAAAATCGCGTTTCAGGGCCCCGGCT
189 TTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCT
* * * * *
177121 CAATTTTACATGATTTTTGGCAAAAAGACTCCTTGAAATATCTATAATTATCGAACGAAATCTCA
254 CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCA
177186 GCCAC
319 GCCAC
* * * *
177191 ATAGGATATAAGGGTTTGTTTTAACGAGCATCTGAATCTTTTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * *
177256 CAGAAAAAAATGGAAAAACGATATTGGAATCGTGAAAAACCCTTTAATCTTTTTGACGTTGAATT
66 CAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* *
177321 ATATAA-TTTTTCGAAGAATTGTG-TATAAAAAATTATGAAAAGCCCTTTAATCTTTTTGACGTT
130 ATATAATTTTTTCTAAGAATTGTGTTA-AAAAAATTATGAAAA-------AA--TTTTCG--GTT
* * ** * ** ** ** * * *
177384 GAATTATTTAATTTTTTCGAAGAATTGTGTAAAAAAAATTGTGAAAAATTTTTCGG-T----TC-
183 CAGTT-TTT-A----GCCG-A-AATCGTGTACTAACCATCATG----GTTTTTGGGCTAAAAACG
* ** ** * * ***
177443 AGTTT--TAG--CCGAAATC-GTGTATTAACATCATGGTCTTTGGGTTAAA-A-TCGCGTGTCGG
236 CGTTTCGGGGCCCCG-GCTCAGT-T-TT-GCATGAT--T-TTTGGCAGAAAGACTC-C-T-T---
****** * ** ** * *
177501 GGCCCCGGCT-TAGTTT-T-GCA-TGAAT-TTTGGCAG
288 -GAAATATCTATA-TTTATCGAACCAAATCTCAGCCAC
* * ** * * * * * *
177534 A-AAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATAGGATATAAGGATTT
1 ATAGGA-T--AT-AAGGATTTGTTTTTA-CG-AGC--ATCT--G--A-AT---CT-T---G-TTT
* * ** *** ** ** * **
177598 -GTTTTTACGAGCATCTGAATCTTGTTTGGATTTAATTAGGAATAAATTCAGA-A--A-AAAAG-
45 CG-ATTTA--A--TTAGGAAT-AAATTCAGA-AAAAAT-GGAA-AAA--C-GATATTAGAAGCGT
** * * **** *
177657 GAAAA-CGATATAAGAAGCGTGAAAGCCGTTTAAGCTTTTAGGATTTTGAATTAGTATAATTTTT
98 GAAAAGCCCT-T--TAATC-T---TTTTG-A----C------G---TTGAATTA-TATAATTTTT
* *
177721 TCTAAGAATTGTG-TAAAAAAATTGTGAAAAATTTTTCGGTTCAG-TTTTAGCCGAAATCGTGTA
141 TCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCCGAAATCGTGTA
* * * * * * *
177784 TTAA-CATCATGGTCTTTGGGTTAAAATCGCGTGTCGGGGCCCCGGCTTAGTTTTGCATGAATTT
206 CTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTT
*
177848 TGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
271 TGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
*
177901 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * **
177966 CAGAAAAAAAAGGAAAAACGATATAAGAAGCGTGAAAAGCCCTTTAATCTTTTGGATTTTGAATT
66 CAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * *
178031 ATATAATTTTTTCTAAGAATTGTGTAAAAAAAATAATGAAAAATTTTTCGGTTCAGTTTTTAGCC
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCC
* ** *
178096 GAAATCGTGTACTAACCATCATGGTTTTGGGGCTAAAAACGCGTTTCGAAGCCCCAGCTCAGTTT
195 GAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
*
178161 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACTAAATCTCAGCCAC
260 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* *
178225 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCGTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * ** *
178290 CGAAAAAAAAATTGAAAAACGATATTAGAAGCGTGAAAAGCAATTTAATCTTTTTGGCGTTGAAT
66 C--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
* * * *
178355 TATATAA-CTTTTCTAAGAATTGTGTT-AAAAATTTATGAAAAAATTTTGGGGTCAGTTTTTAGC
129 TATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGC
* * * * *
178418 CGAAATCGAGTACTAAACATCATGGTTTTTGGGATAAAAACGCTTTTCGGGGCCGCGGCTCAGTT
194 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
178483 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
259 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * *
178548 ATAGGATATAAGGATTTGTTTTAACGAGCATCTGAATCGTG-TTCGGATTTAATTATGAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTC-GATTTAATTAGGAATAAAT
* * * * *
178612 TCGGAAAAAAAATTGAAAACCGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGAAGTTGAA
65 TC--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAA
* **
178677 TTTTATAAAGTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAG
128 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAG
* * * ** * *
178742 CCGAAATCGTTTACGT---TATCATGGTTTTTTGTTTAAAAACGCGTTTCGGTGCCCCGACTCAG
193 CCGAAATCGTGTAC-TAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAG
* *
178804 TTTTGCATGATTTCTGGCAGAAAGAATCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCC
257 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCC
178869 AC
322 AC
* * *
178871 ATAGCATATAAGGATTTGTTTTTACGAGCATCTGAATCGTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * * *
178936 CGGAAAAAAAATTGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCATTGAAT
66 C--AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
** * *
179001 TATATAACATTTTCTACA-AATTGTGTTAAAAACAATTATGAAAAAAAAAATTT-GGGTCAGTTT
129 TATATAATTTTTTCTA-AGAATTGTGTTAAAAA-AATTATG---AAAAAATTTTCGGTTCAGTTT
* *
179064 TTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAATCGCGTTTCAGGGCCCCGGCT
189 TTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCT
* * * *
179129 CCGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATAATTATCGAACGAAATCTCA
254 CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCA
*
179194 GCCAT
319 GCCAC
*
179199 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTGGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
* * * *
179264 CGGGAAAAAATGGAAAAACGATATTAGAATCGTGAAAAACCCTTTAATCTTTTTTACGTTGAATT
66 C-AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* *
179329 ATATAATTTTTTTTAAGAATTGTGTAAAAAAAATTATGAAAA
130 ATATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAA
179371 GCCCTTTAAT
Statistics
Matches: 6292, Mismatches: 1011, Indels: 986
0.76 0.12 0.12
Matches are distributed among these distances:
312 95 0.02
313 328 0.05
314 100 0.02
315 170 0.03
316 165 0.03
317 15 0.00
318 12 0.00
320 19 0.00
321 130 0.02
322 535 0.09
323 1634 0.26
324 510 0.08
325 594 0.09
326 411 0.07
327 227 0.04
328 428 0.07
329 1 0.00
330 6 0.00
331 5 0.00
332 7 0.00
333 7 0.00
334 11 0.00
335 3 0.00
336 15 0.00
337 17 0.00
338 17 0.00
339 13 0.00
340 22 0.00
341 16 0.00
342 39 0.01
343 17 0.00
344 8 0.00
345 7 0.00
346 17 0.00
347 16 0.00
348 14 0.00
349 8 0.00
350 8 0.00
351 1 0.00
352 9 0.00
353 6 0.00
354 11 0.00
355 7 0.00
356 6 0.00
357 3 0.00
358 10 0.00
359 4 0.00
360 6 0.00
362 5 0.00
363 14 0.00
364 18 0.00
365 7 0.00
366 14 0.00
367 21 0.00
368 40 0.01
369 34 0.01
370 20 0.00
371 20 0.00
372 29 0.00
373 41 0.01
374 29 0.00
375 47 0.01
376 14 0.00
377 12 0.00
378 11 0.00
379 6 0.00
380 7 0.00
381 3 0.00
382 10 0.00
383 7 0.00
384 5 0.00
385 16 0.00
386 8 0.00
387 4 0.00
388 10 0.00
389 26 0.00
390 22 0.00
391 1 0.00
392 6 0.00
393 17 0.00
394 5 0.00
396 1 0.00
399 13 0.00
400 16 0.00
401 12 0.00
402 1 0.00
403 2 0.00
404 8 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (323 bp):
ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
CAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTA
TATAATTTTTTCTAAGAATTGTGTTAAAAAAATTATGAAAAAATTTTCGGTTCAGTTTTTAGCCG
AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTT
GCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
Found at i:173259 original size:970 final size:967
Alignment explanation
Indices: 171252--175316 Score: 5890
Period size: 970 Copynumber: 4.2 Consensus size: 967
171242 GGTCTGATCA
* * * *
171252 ATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGACTAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTTGATTTAATTAGGAATAAATT
* *
171317 CGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATA
66 CGG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAATT
* * * * * **
171382 ATATAATTTTTTCGAAAAATTGTGTAAAAAAAATTATGAAAAATTTTTAGTTTCAG-TTTTAGCC
130 ATATAACTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAATTTTT-GGGTCAGTTTTTAGCC
* * * *
171446 GAAATCATGTACTAACCATCATGGTTTTTGGGCTAAAATCACGTTTCGGGGCCCCGGCTCAGTTT
194 GAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
** * *
171511 TGCATGAACTTTGGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
259 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
*
171576 TAGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
324 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
*
171641 AG--AAAAAAT--------GATATTAGAAGCGTGAAAAGACCTTTAATCTTTTTGACGTTGAATT
389 AGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* *
171696 ATATAATTTTTTTCTAAGAATTGTGT--AAAAAATTATGAAAAATTTTTCGGTTTAGTTTTTAGC
454 ATATAA-TTTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAA-TTTTCGGTTCAG-TTTTAGC
* * * *
171759 CGAAATCGTGTACTAACCATCATGGTTTTTTTTGGCTAAAAACGCGTTTCGAGGCCCCGACTCAG
516 CGAAATCGTGTACTAACCATCATGG--TTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAG
* *
171824 TTTTGCATG-ATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTCATCGTACCAAATCTCAGC
579 TTTTGCATGAATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGC
* *
171888 CACATAGGATATAACGATTTGTTATTGA-GAGCATCTGAATCTTGTTTCGATTTAATTAGGAATA
644 CACATAGGATATAAGGATTTGTT-TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATA
***
171952 AATTCGGTAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
708 AATTCAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
* * * * * *
172017 ATTATATAATTTTT-T-TGAA------AAAAAAAGTATGAAAAATTTTTCGGTTCA-TGTTTTAG
773 ATTATATAATTTTTCTAAGAATTGTGTTAAAAAATTATAAAAAAATTTTCGGGTCAGT-TTTTAG
* * * * * *
172073 CCGGAATTGTGTACTAACCTTTATGGTTTTTGGGTTAAAAACGCGTTTCGAGGCCCCGGCTCAGT
837 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGAGGCCCCAGCTCAGT
*
172138 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTGTATTCATCGAACCAAATCTCAGCCA
902 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCA
172203 C
967 C
* **
172204 ATAGGATATAAGGATTTGTTTTTACGAGCATCTCAA--TTATGTTTGGATTTAATTTTGAATAAA
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTAT-TTT-GATTTAATTAGGAATAAA
* *
172267 TTCGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGGCGTTGAAT
64 TTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
*
172332 TATATAACTTTTTCTAAGAATTGTGTT-AAAAATTTATGAAAAACTTTTTGGGTCAGTTTTTATC
129 TATATAACTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAA-TTTTTGGGTCAGTTTTTAGC
* * * *
172396 CAAAATCGTGTAGTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGAGCCCCGGCTTAGTT
193 CGAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
* *
172461 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGGACCAAATCTCAACCAC
258 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
* * *
172526 ATAGGACATAAGGATTTGTCTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGGAATAAATT
323 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATT
172591 CAGGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
388 CA-G-AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
*
172656 ATTATATAA-TTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAATGTTTCGTTTCAGTTTTAG
451 ATTATATAATTTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAAT-TTTCGGTTCAGTTTTAG
* * *
172720 ACGAAATCGTGTACTAACCATCATGGTTTTTGGGCTTAAATCACGTTTCGGGGCCCCGGCTCAGT
515 CCGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGT
* * *
172785 TTTGCATGAACTTT-GGCTGAAATACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCC
580 TTTGCATGAATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCC
* *
172849 ACATAGGATATAAGGATTTGTCTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATGAA
645 ACATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAA
* * *
172914 TTCAGAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
710 TTCAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAAT
172979 TATATAATTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGC
775 TATATAATTTTT-CTAAGAATTGTGTT-AAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGC
* * * *
173044 CGAAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTT
838 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGAGGCCCCAGCTCAGTT
173109 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
903 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
* * *
173174 ATAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTTGATTTAATTAGGAATAAATT
* *
173239 CAGAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTA
66 CGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTA
* * *
173304 TATAA-TTTTTACTAAGAATTGTGTTAAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCC
131 TATAACTTTTT-CTAAGAATTGTGTTAAAAAATTTAT-GAAAAATTTTTGGGTCAGTTTTTAGCC
*
173368 GAAATCGTGTACTAACTATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
194 GAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTT
*
173433 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACA
259 TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
* * * * *
173498 TAGGATATAACGATTTGTTTTTACGTGCATCTCAATCTTATTTTGATTTAATTAGGAATAAATTC
324 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
* * *
173563 AGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTTAATATTTTTGACGTTGCATT
389 AGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATT
* * * *
173628 ATATAATTTTTTCGAAGTATTGAGTAAAAAAAAGTATGAAATATTTTCGGTTCAGTTTTAGCCGA
454 ATATAATTTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGCCG-
* * *
173693 AAATCGTGTACTAACCATCATTGATTTTGGGCTAAAATCGCGTTTTGGGGCCCCGGCTCAGTTTT
518 AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGTTTT
* * * * *
173758 GCATTAA-TTTAGGCAGAAATAATCCTTGAAATATCTATATTTATCGAACCAAATCTCAGTCATA
583 GCATGAATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACA
* *
173822 GAAGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
648 TAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTC
173887 AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTAT
713 AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTAT
* * * * * * *
173952 ATATCTTTTTTCTAAGAATTGTGTTAAAAATTTATGAAAAACTTTTCGGTTCAGGTTTTAACCGA
778 ATA--ATTTTTCTAAGAATTGTGTTAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCCGA
* *
174017 AATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCATTTCGAGGCCCCAGCTCTGTTTTG
841 AATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGAGGCCCCAGCTCAGTTTTG
* *
174082 CATGAATTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCAC
906 CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
* * *
174144 ATAGGATTTAAGGATTT-TTTTTACGAGCATCTGAATCTT-TTTTCGATTTAAATAAGAATAAAT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTT-GATTTAATTAGGAATAAAT
174207 TCGGAAAAAAATGG-AAAACGATATTAGAAGCGTGAAAAG-CACTTTAATCTTTTTGACGTTGAA
65 TCGG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCA-TTTAATCTTTTTGACGTTGAA
* ** *
174270 TTATATAATTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAATTTTATGGGAAACTTTTTAG
128 TTATATAACTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAATTTT-TGGGTCAGTTTTTAG
* *
174335 CCGAAATCGTGTACTAACCATCATGGTTTTTG-CCT-AAAA--CG---C---GCCCCGTCTCAGT
192 CCGAAATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGT
*
174390 TTTGCATGATTTTTGGCAGAAAGACACCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
257 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
*
174455 CATAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTTA-GAATAAA
322 CATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA-TTAGGAATAAA
* * *
174519 TTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTCTAATCTTTTTGAAGTTGA
386 TTCAGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
* *
174584 ATTATATAACTTTTTCTAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGC
451 ATTATATAATTTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGC
*
174649 CGAAATCGTGTACTAACCATCATGATTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGTT
516 CGAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGTT
* * * *
174714 TTGCATGAATTTT-GGCAGAAAGACTTCTTGAAACATCTATATTGATTGAACCAAATCTCAGCCA
581 TTGCATGAATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCA
* * *
174778 CATAGGATATAAGGATTTGTTTTTACCAGCATCT-ATATCTTGTTTGGACTTAATTAGGAATAAA
646 CATAGGATATAAGGATTTGTTTTTACGAGCATCTGA-ATCTTGTTTCGATTTAATTAGGAATAAA
* *
174842 TTCGGAAAAAAAATGGAAATACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGGCGTTGA
710 TTC--AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGA
* *
174907 ATTATATAATTTTTCCTAAGAATTGTGTTAAAAAATAATGAAAAAAATTTT-TGGTCAGTTTTTA
773 ATTATATAATTTTT-CTAAGAATTGTGTTAAAAAATTAT-AAAAAAATTTTCGGGTCAGTTTTTA
* * * * *
174971 GCCGAAATCATGTACTAACACCATCATGGTTTTTGGGTTATAATCACGTTTC-AGGGCCCCAGCT
836 GCCGAAATCGTGTACT-A-ACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGA-GGCCCCAGCT
* ** * *
175035 CAGTTTTGCTTGATTTTTACCAGAAAGACTCCTTGAAATATCTATATTTATCGAATCAAATCTCA
898 CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCA
175100 GCCAC
963 GCCAC
* * * *
175105 ATAGGATATAAGGATTTGTTTTTTCGAGCATCTGAATCTTGTTTCGATTTAATTATGAATAAATT
1 ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTTGATTTAATTAGGAATAAATT
* *
175170 CGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAGAGCCATTTAATCTTTTTGGCGTTGAAT
66 CGG--AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAAT
* ** * *
175235 TATATAACTTTTTATAAGAATTGTGTTAAAAAATTTATGAAATTTTTTTTGGGTTAGTTTTTAAC
129 TATATAACTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAA-AATTTTTGGGTCAGTTTTTAGC
175300 CGAAATCGTGTACTAAC
193 CGAAATCGTGTACTAAC
175317 AATCTTGTTG
Statistics
Matches: 2813, Mismatches: 237, Indels: 114
0.89 0.07 0.04
Matches are distributed among these distances:
950 23 0.01
951 271 0.10
952 55 0.02
955 7 0.00
957 1 0.00
958 175 0.06
959 301 0.11
960 297 0.11
961 139 0.05
962 76 0.03
963 92 0.03
964 114 0.04
965 8 0.00
967 4 0.00
968 17 0.01
969 251 0.09
970 741 0.26
971 227 0.08
972 14 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (967 bp):
ATAGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTTGATTTAATTAGGAATAAATT
CGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCATTTAATCTTTTTGACGTTGAATTA
TATAACTTTTTCTAAGAATTGTGTTAAAAAATTTATGAAAAATTTTTGGGTCAGTTTTTAGCCGA
AATCGTGTACTAACCATCATGGTTTTTGTGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTG
CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACATA
GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTCAG
AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTAT
ATAATTTTTTCGAAGAATTGTGTAAAAAAAATTATGAAAAATTTTCGGTTCAGTTTTAGCCGAAA
TCGTGTACTAACCATCATGGTTTTTGGGCTAAAATCGCGTTTCGGGGCCCCGGCTCAGTTTTGCA
TGAATTTTAGGCAGAAAGACTCCTTGAAATATCTATATTTATCGAACCAAATCTCAGCCACATAG
GATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGGAATAAATTCAAA
AAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATA
ATTTTTCTAAGAATTGTGTTAAAAAATTATAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCG
TGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGAGGCCCCAGCTCAGTTTTGCATGA
TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCAC
Found at i:175416 original size:102 final size:101
Alignment explanation
Indices: 175216--175418 Score: 273
Period size: 101 Copynumber: 2.0 Consensus size: 101
175206 AGAGCCATTT
* * * * ****
175216 AATCTTTTTGGCGTTGAATTATATAACTTTTTATAAGAATTGTGTTAAAAAATTTATGAAATTTT
1 AATCTTGTTGGCGTTGAATTATATAACATTTTATAAGAATTGCGTTAAAAAAATTATGAAAAAAA
* *
175281 TTTTGGGTTAGTTTTTAACCGAAATCGTGTACTAAC
66 ATTTGGCTTAGTTTTTAACCGAAATCGTGTACTAAC
*
175317 AATCTTGTTGGCGTTGAATTATATAACATTTTCTACA-AATTGCGTTAAAAACAATTATGAAAAA
1 AATCTTGTTGGCGTTGAATTATATAACATTTTATA-AGAATTGCGTTAAAAA-AATTATGAAAAA
*
175381 AAATTTGGCTTAGTTTTTAGCCGAAATCGTGTACTAAC
64 AAATTTGGCTTAGTTTTTAACCGAAATCGTGTACTAAC
175419 CATCATGGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
101 45 0.51
102 43 0.49
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (101 bp):
AATCTTGTTGGCGTTGAATTATATAACATTTTATAAGAATTGCGTTAAAAAAATTATGAAAAAAA
ATTTGGCTTAGTTTTTAACCGAAATCGTGTACTAAC
Found at i:175716 original size:69 final size:69
Alignment explanation
Indices: 175629--175772 Score: 252
Period size: 69 Copynumber: 2.1 Consensus size: 69
175619 ATTAGAATCG
*
175629 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
1 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTATGTAAAAAAA
*
175694 ATTA
66 ACTA
* *
175698 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATTTAATTTTTTCGAAGAATTATGTAAAAAAT
1 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTATGTAAAAAAA
175763 ACTA
66 ACTA
175767 TGAAAA
1 TGAAAA
175773 ATTTTTCGGT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.40
Consensus pattern (69 bp):
TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTATGTAAAAAAA
ACTA
Found at i:177397 original size:68 final size:69
Alignment explanation
Indices: 177288--177431 Score: 245
Period size: 68 Copynumber: 2.1 Consensus size: 69
177278 ATTGGAATCG
*
177288 TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAA-TTTTTCGAAGAATTGTGTATAAAAA
1 TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
177352 ATTA
66 ATTA
* *
177356 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATTTAATTTTTTCGAAGAATTGTGTAAAAAAA
1 TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
*
177421 ATTG
66 ATTA
177425 TGAAAAA
1 TGAAAAA
177432 TTTTTCGGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
68 37 0.53
69 33 0.47
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.40
Consensus pattern (69 bp):
TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
ATTA
Found at i:179407 original size:69 final size:69
Alignment explanation
Indices: 179296--179440 Score: 245
Period size: 69 Copynumber: 2.1 Consensus size: 69
179286 ATTAGAATCG
* **
179296 TGAAAAACCCTTTAATCTTTTTTACGTTGAATTATATAATTTTTTTTAAGAATTGTGTAAAAAAA
1 TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
179361 ATTA
66 ATTA
* *
179365 TGAAAAGCCCTTTAATCTTTTTGACGTTGAATTATTTAATTTTTTCGAAGAATTGTGTAAAAAAA
1 TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
179430 ATTA
66 ATTA
179434 TGAAAAA
1 TGAAAAA
179441 TTTTTCGGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (69 bp):
TGAAAAACCCTTTAATCTTTTTGACGTTGAATTATATAATTTTTTCGAAGAATTGTGTAAAAAAA
ATTA
Done.