Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015404.1 Corchorus olitorius cultivar O-4 contig15437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112230

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
857--1988
325
3.5
324
86
4
1401
32
14
17
34
1.91
7591--7624
3
11.3
3
87
0
50
67
0
2
29
1.05
11774--11811
19
2.0
20
84
5
51
31
18
18
31
1.95
12146--12202
29
2.0
29
83
13
73
45
17
14
22
1.84
13337--13372
17
2.2
16
90
5
54
13
16
25
44
1.85
17425--17593
31
5.6
31
65
21
108
34
17
18
28
1.94
17429--17589
60
2.7
60
91
1
252
36
16
19
28
1.93
17549--17610
31
2.1
29
85
8
81
38
20
19
20
1.93
17630--17794
60
2.8
60
85
1
233
29
19
16
34
1.94
18066--18098
2
16.5
2
100
0
66
48
0
0
51
1.00
31095--31143
15
3.3
15
83
11
64
51
0
44
4
1.20
32173--32208
18
2.0
18
88
0
54
58
8
8
25
1.55
33592--33627
16
2.2
17
90
5
56
55
8
0
36
1.30
33902--33962
27
2.3
27
85
2
88
59
6
4
29
1.44
33902--33973
27
2.6
27
80
6
83
61
8
5
25
1.46
45877--46001
63
2.0
63
93
0
214
21
31
21
25
1.98
51740--51790
24
2.2
23
85
3
66
50
5
0
43
1.26
51813--51868
28
2.0
28
82
0
67
60
19
3
16
1.49
58797--58838
20
2.1
20
100
0
84
38
9
21
30
1.85
75532--78350
331
8.5
330
76
8
2251
34
14
14
36
1.87
78498--80858
332
7.1
327
75
10
1663
34
13
15
37
1.86
78483--80866
671
3.6
660
77
8
2025
34
13
15
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81035--81994
66
14.6
66
70
13
428
35
12
19
32
1.89
81077--82099
22
46.5
22
68
13
344
35
12
19
32
1.89
81035--81380
22
15.8
22
69
15
155
32
12
20
34
1.90
81404--81490
45
1.9
46
86
6
124
33
11
20
34
1.89
81512--81637
41
3.0
41
76
12
114
36
11
20
30
1.89
82142--82187
24
1.9
24
90
0
74
19
8
28
43
1.80
82192--82262
35
2.0
35
97
0
133
28
30
11
29
1.91
82867--82904
20
1.9
20
88
0
58
15
13
0
71
1.16
86185--86210
11
2.4
11
100
0
52
84
0
0
15
0.62
87027--87052
10
2.6
10
100
0
52
92
0
7
0
0.39
99396--102817
321
10.4
319
75
10
2609
36
16
13
33
1.88
103879--103930
26
2.0
27
85
7
72
63
5
9
21
1.45
109603--109631
15
1.9
15
100
0
58
0
24
0
75
0.80
110628--112189
330
4.8
322
77
11
1312
37
15
14
32
1.88
111633--112230
320
1.8
321
82
7
760
38
16
14
30
1.88

Tables:   1

The End!